NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33418.1 Public Homo sapiens 2 DUSP28 24 110 108 CCDS HistoryNCBI Gene:285193Re-query CCDS DB by CCDS ID:33418.1Re-query CCDS DB by GeneID:285193See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 33418.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343217.6 ENSP00000344235.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343217.6Link to Ensembl Protein Viewer:ENSP00000344235.2Re-query CCDS DB by Nucleotide ID:ENST00000343217Re-query CCDS DB by Protein ID:ENSP00000344235
Original member Current member EBI ENST00000405954.2 ENSP00000385885.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000405954.2Link to Ensembl Protein Viewer:ENSP00000385885.2Re-query CCDS DB by Nucleotide ID:ENST00000405954Re-query CCDS DB by Protein ID:ENSP00000385885
Original member Current member NCBI NM_001033575.1 NP_001028747.1 Accepted alive Link to Nucleotide Sequence:NM_001033575.1Link to Protein Sequence:NP_001028747.1Re-query CCDS DB by Nucleotide ID:NM_001033575Re-query CCDS DB by Protein ID:NP_001028747Link to BLAST:NP_001028747.1
Original member Current member NCBI NM_001370465.2 NP_001357394.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370465.2Link to Protein Sequence:NP_001357394.1Re-query CCDS DB by Nucleotide ID:NM_001370465Re-query CCDS DB by Protein ID:NP_001357394Link to BLAST:NP_001357394.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028747.1 176 Q4G0W2 176 100% 0 0
NP_001357394.1 176 Q4G0W2 176 100% 0 0

Chromosomal Locations for CCDS 33418.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 240560685 240561077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 240561330 240561467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGGACCGGCAGAAGCTGGGCGCCGCGGGGCCGCCTCGCCCGTACCTCCACCGTTGGTGCGCGTCGCGC
CCTCACTCTTCCTCGGGAGCGCGCGAGCCGCGGGCGCGGAGGAGCAGCTGGCGCGCGCGGGAGTCACGCT
GTGCGTCAACGTCTCCCGCCAGCAGCCCGGCCCGCGCGCGCCCGGCGTGGCAGAGCTGCGCGTGCCCGTG
TTCGACGACCCGGCTGAGGACCTGCTGGCGCACCTGGAGCCCACGTGCGCCGCCATGGAGGCCGCGGTGC
GCGCCGGCGGCGCCTGCCTAGTCTACTGCAAGAACGGCCGCAGCCGCTCGGCCGCCGTCTGCACCGCGTA
CCTCATGCGGCACCGCGGCCTCAGCCTGGCGAAGGCCTTCCAGATGGTGAAGAGCGCTCGCCCGGTAGCA
GAACCGAACCCGGGCTTCTGGTCTCAGCTCCAGAAGTATGAGGAGGCCCTCCAGGCCCAGTCCTGCCTGC
AGGGAGAGCCCCCAGCCTTAGGGTTGGGCCCTGAGGCTTGA

Translation (176 aa):
MGPAEAGRRGAASPVPPPLVRVAPSLFLGSARAAGAEEQLARAGVTLCVNVSRQQPGPRAPGVAELRVPV
FDDPAEDLLAHLEPTCAAMEAAVRAGGACLVYCKNGRSRSAAVCTAYLMRHRGLSLAKAFQMVKSARPVA
EPNPGFWSQLQKYEEALQAQSCLQGEPPALGLGPEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH