NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50697.1 Public Mus musculus 2 Fam227b 23 108 98 CCDS HistoryNCBI Gene:75823Re-query CCDS DB by CCDS ID:50697.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 50697.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110446.8 ENSMUSP00000106076.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110446.8Link to Ensembl Protein Viewer:ENSMUSP00000106076.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110446Re-query CCDS DB by Protein ID:ENSMUSP00000106076
Original member Current member EBI ENSMUST00000178118.7 ENSMUSP00000136349.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178118.7Link to Ensembl Protein Viewer:ENSMUSP00000136349.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178118Re-query CCDS DB by Protein ID:ENSMUSP00000136349
Original member Current member NCBI NM_029455.3 NP_083731.2 Accepted alive Link to Nucleotide Sequence:NM_029455.3Link to Protein Sequence:NP_083731.2Re-query CCDS DB by Nucleotide ID:NM_029455Re-query CCDS DB by Protein ID:NP_083731Link to BLAST:NP_083731.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083731.2 532 Q9D518 532 100% 0 0

Chromosomal Locations for CCDS 50697.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 125983628 125983765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125986256 125986325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125987896 125987970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125988967 125989042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126003828 126003993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126007237 126007334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126100900 126101034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126116003 126116129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126118994 126119095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126120983 126121081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126123991 126124092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126124580 126124615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126125004 126125071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126126846 126127077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126144270 126144323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126146231 126146251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGAGTTGCCTGTCCCTCAGAAATTACCGGATCCCCCAAGGAGCTTTGATGAATTCTTAAAGTCTCAAA
ACTGGGATTATTGGCCCAGGGATGTTCATTTTAGAGATAGTGATATATGGGAAGATACTCTGAAAAAACT
AGAAGAGGCTATTTCATATACTTCTATTTATTCTTATCTGTGGACCAACGTGCCTCGGCTGTATGATATC
GTCGACAGCTTGGAGTCAAAATTAAAGGAAAGCTCACATCTTTTGCAACACCATGCCTCCAGATTATTTG
AAAGTGACAAAATGATTTCCAAGAAAAGGTCATATACAAACCTGGAACGCTACAAAGCATTTGTAAAAGA
ACACTATAGGCCAAAGAAAATCGCGCTTTCAGATCGAATGGAGACAGAGAAGAATATAGAGGGTTGCACC
TTTTTATTCAACCAAAATGAAGTGACACAATTACCCAGACATTTGGATGCTAAACAAATTTATCTTTATG
TTTTAAAAACACATAACTTTGAGGAAAAGGTATTTAAAGTCTGGAAAACCCATGTTCTCTCAGATTGCTC
CATTGCTCTTTTGCATGACTCCTTTTGGTGGTGGTTTCTACATAAATTCAAGCCTGACAAAAGAGATGAA
GATTTCTTGTTTGATAGAATTGCAGAAAGTTATGTCACACTTTTCATAAAAATACCTCTAAGGAGAAAGG
ATGCATTCTTTAAGATGTATCCTGACTGCTTGACTCAAGCTGTCTACACAACCTTCCAGGAATCATTTCC
AGAATCCTGCAGCCTCTTCAATGATAAATTCAAAGAAGACCTAGGAAACACGATTTTTCTTTGGTTGTCA
GGTCTAAAGCCTGAAACTGGCTTTTGGACCCACTGGAAACTGCAAGACCTCTGCACAACCACCATTCATG
GCAGCAGGCGTGTACCTGTGAAGTTGAGAAGGAGCGTCATTCCCAGCCAGGAGCACATACCAGGCATTAG
AGACTTGAAAATCGAGGATATTCTAAAGAACCCAAGAGCGTACGCAATGCCTAAACTCATGAAAGAGTCC
GTAGCATCAAAAGCAGCAACCAAGCCTTCCCACTATAGGAGCTTGGGTCCAGAGTTTCACAAAGTTCTCT
TTGACTTTGGAGGCCAGAGCCCACTGATTCTGTACTATCTTAAGATGCACGAGCTAGGAGGTATTTCCGT
CACTCACAATCCGAAGGGAACCAAGTTCACCAAGATACTCCGGGAGCCATCACCTGCTCCAACATACTGC
GACATCATCAGGGATGCCAAAAGAAAATTTGCAGATAACAAGAAGGATTTTAAGAGAGTAAAGCAAAGAA
TCAAAGATGATATCAAGTTCCTGAGAGAGCAACAGGAACTAATTGACAAGGAGCTTGACCGGATCCAAGC
AAAGGCTTCCAAAAATCTCCAAGAAGTCAAAAATGAATTTGAGAATTTTCTACATAAACAACGTGTTGAG
GCAAAACTCAAGGAGGAATATGGAGGATCAACATCAGCATCAGAGTCGCCACAGTCGATGCAGTCACCAC
AATCATCATCGTCATTTCCTACTATATCAGAAGACTTCAACAATGTGGAAGAGGGCTAA

Translation (532 aa):
MELPVPQKLPDPPRSFDEFLKSQNWDYWPRDVHFRDSDIWEDTLKKLEEAISYTSIYSYLWTNVPRLYDI
VDSLESKLKESSHLLQHHASRLFESDKMISKKRSYTNLERYKAFVKEHYRPKKIALSDRMETEKNIEGCT
FLFNQNEVTQLPRHLDAKQIYLYVLKTHNFEEKVFKVWKTHVLSDCSIALLHDSFWWWFLHKFKPDKRDE
DFLFDRIAESYVTLFIKIPLRRKDAFFKMYPDCLTQAVYTTFQESFPESCSLFNDKFKEDLGNTIFLWLS
GLKPETGFWTHWKLQDLCTTTIHGSRRVPVKLRRSVIPSQEHIPGIRDLKIEDILKNPRAYAMPKLMKES
VASKAATKPSHYRSLGPEFHKVLFDFGGQSPLILYYLKMHELGGISVTHNPKGTKFTKILREPSPAPTYC
DIIRDAKRKFADNKKDFKRVKQRIKDDIKFLREQQELIDKELDRIQAKASKNLQEVKNEFENFLHKQRVE
AKLKEEYGGSTSASESPQSMQSPQSSSSFPTISEDFNNVEEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH