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Report for CCDS28065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28065.1 Public Mus musculus 16 Senp2 23 108 98 CCDS HistoryNCBI Gene:75826Re-query CCDS DB by CCDS ID:28065.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023561.7 ENSMUSP00000023561.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023561.7Link to Ensembl Protein Viewer:ENSMUSP00000023561.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023561Re-query CCDS DB by Protein ID:ENSMUSP00000023561
Original member Current member NCBI NM_029457.3 NP_083733.1 Accepted alive Link to Nucleotide Sequence:NM_029457.3Link to Protein Sequence:NP_083733.1Re-query CCDS DB by Nucleotide ID:NM_029457Re-query CCDS DB by Protein ID:NP_083733Link to BLAST:NP_083733.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083733.1 588 Q91ZX6-1 588 100% 0 0

Chromosomal Locations for CCDS 28065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22009642 22009742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22011494 22011552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22014124 22014257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22016199 22016265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22018337 22018427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22023640 22023808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22026639 22026739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22027969 22028063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22028541 22028592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22032104 22032164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22036470 22036646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22038537 22038668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22040440 22040643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22041322 22041401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22042970 22043054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22044213 22044308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22046633 22046695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGTACAGATGGCTGGCTAAGGTTCTCGGCACCATTCTTCGCTTGTGTGAGCGGCCCGCGCCCGGGGCCC
GCGCCCTACTCAAGAGGCGGCGCTCCAGCAGCACTCTGTTTTCTACTGCAGTGGACACTGATGAGATCCC
AGCCAAAAGGCCAAGATTAGATTGCTTTATTCACCAAGTGAAGAACAGTCTCTACAATGCTGCCAGTTTA
TTTGGATTCCCGTTCCAGCTGACCACAAAACCCATGGTGTCTTCTGCTTGTAATGGAACACGGAATGTGG
CCCCTTCTGGAGAGGTCTTTTCGAACTCTTCATCTTGTGAGCTGATGAGTTCTGGATCCTGCAGCAGCAT
GCTGAAACTGGGTAATAAATCTCCTAATGGAATAAGCGACTATCCAAAGATCAGAGTGACAGTGACCCGC
GATCAGCCACGGAGAGTCCTGCCCTCCTTTGGTTTTACGCTGAAATCGGAAGGCTATAATAGAAGGCCAA
GTGGTCGTCGCCATAGCAAAAGCAATCCAGAGAGTTCCTTAACATGGAAGCCTCAGGAGCAAGGTGTGAC
AGAGATGATTTCTGAAGAGGGTGGCAAGGGTGTGAGGCGTCCCCACTGCACCGTGGAGGAGGGTGTCCAA
AAGGATGAAAGAGAAAAGTATCGAAAGTTATTGGAGCGACTTAAAGAAGGTGCTCATGGAAGCACGTTCC
CTCCCACGGTTTCACACCACAGTTCTCAGAGAATTCAGATGGACACATTAAAGACCAAAGGCTGGGTGGA
GGAGCAGAATCATGGCGTCAGAACAACCCATTTTGTTCCAAAACAGTATAGAGTTGTTGAAACAAGAGGA
CCTCTCTGTTCAATGAGAAGTGAAAAGAGGTATTCAAAAGGGAAAGCTGATACAGAGAAGGTGGTGGGAC
TCCGATTTGAAAAGGAAGGTACAAGAGGACACCAAATGGAGCCTGATCTGTCAGAAGAAGTGTCTGCCCG
ACTTCGTCTAGGAAGTGGAAGCAATGGCTTACTCAGAAGGAAAATATCAGTGCTTGAGATAAAGGAAAAG
AACTTCCCGAGCAAAGAGAAGGACAGAAGAACGGAAGACCTCTTTGAATTTACAGAGGACATGGAAAAGG
AAATCAGTAATGCCCTGGGCCACGGCCCACCAGATGAGATTTTGAGCAGCGCTTTCAAGTTGCGAATCAC
CCGCGGAGACATCCAGACCTTAAAGAACTATCATTGGCTCAACGATGAGGTCATTAATTTTTATATGAAT
CTTTTAGTGGAAAGGAGTAAAAAGCAAGGTTATCCAGCACTTCATGCATTCAGTACATTCTTCTATCCTA
AGCTAAAGTCTGGAGGTTACCAAGCAGTGAAAAGATGGACCAAAGGGGTAAATCTCTTCGAACAAGAACT
TGTTCTGGTACCTATTCATCGGAAGGTACATTGGAGCCTGGTGGTGATGGACCTAAGAAAAAAGTGTCTT
AAATATCTGGATTCTATGGGACAAAAAGGCCACAGGATCTGTGAGATTCTTCTTCAGTATTTACAGGATG
AAAGCAAGACCAAAAGAAATACAGATCTCAACCTCTTAGAGTGGACCCACTACAGCATGAAGCCACATGA
GATTCCTCAGCAGTTGAATGGGAGTGACTGTGGAATGTTTACTTGTAAATATGCAGATTATATTTCTAGG
GACAAACCTATCACATTCACTCAGCACCAGATGCCTCTCTTCCGGAAGAAGATGGTGTGGGAGATCCTTC
ACCAGCAGTTGCTGTGA

Translation (588 aa):
MYRWLAKVLGTILRLCERPAPGARALLKRRRSSSTLFSTAVDTDEIPAKRPRLDCFIHQVKNSLYNAASL
FGFPFQLTTKPMVSSACNGTRNVAPSGEVFSNSSSCELMSSGSCSSMLKLGNKSPNGISDYPKIRVTVTR
DQPRRVLPSFGFTLKSEGYNRRPSGRRHSKSNPESSLTWKPQEQGVTEMISEEGGKGVRRPHCTVEEGVQ
KDEREKYRKLLERLKEGAHGSTFPPTVSHHSSQRIQMDTLKTKGWVEEQNHGVRTTHFVPKQYRVVETRG
PLCSMRSEKRYSKGKADTEKVVGLRFEKEGTRGHQMEPDLSEEVSARLRLGSGSNGLLRRKISVLEIKEK
NFPSKEKDRRTEDLFEFTEDMEKEISNALGHGPPDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMN
LLVERSKKQGYPALHAFSTFFYPKLKSGGYQAVKRWTKGVNLFEQELVLVPIHRKVHWSLVVMDLRKKCL
KYLDSMGQKGHRICEILLQYLQDESKTKRNTDLNLLEWTHYSMKPHEIPQQLNGSDCGMFTCKYADYISR
DKPITFTQHQMPLFRKKMVWEILHQQLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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