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Report for CCDS28873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28873.1 Public Mus musculus 17 Rftn1 23 108 98 CCDS HistoryNCBI Gene:76438Re-query CCDS DB by CCDS ID:28873.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044503.13 ENSMUSP00000046524.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044503.13Link to Ensembl Protein Viewer:ENSMUSP00000046524.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044503Re-query CCDS DB by Protein ID:ENSMUSP00000046524
Original member Current member NCBI NM_181397.2 NP_852062.1 Accepted alive Link to Nucleotide Sequence:NM_181397.2Link to Protein Sequence:NP_852062.1Re-query CCDS DB by Nucleotide ID:NM_181397Re-query CCDS DB by Protein ID:NP_852062Link to BLAST:NP_852062.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852062.1 554 Q6A0D4 554 100% 0 0

Chromosomal Locations for CCDS 28873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49994155 49994481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50002632 50002713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50004254 50004357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50036941 50037056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50047297 50047500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50055237 50055627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50086568 50086676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50107070 50107256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50169003 50169147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGGTTGCAGTTTGAACAAGCTGGAGAAACGTGAAGAAAAGCGGCCTGGGAACATTTATTCAACTCTGA
AG
AGACCTCAGGTGGAGACCAAAGTAGATGTGACCTATGAGTACTGCTTTCTAGAGTTCACCACACTGAC
T
GCCGCGGAGCTGCCGAGATCCTCCGCCACGAGGTTAGCCTCTCTGCGGGACCTGCCTGACCAGCTTCTG
GAG
CTGTACCAACAAGGCTTCTCACTGGCCGCCCTGCACCCATTTGTGCAGCCAACCCGCAGGCAAGAGA
AG
ATCCTCCTGGAACACATCTTTCGGGCCATCCTGGTCAAGAAAACCAACAGGTCTCAGAAGGCTGAGCT
T
CACGACGAAGGCTACACCCTGGAATTGGATTACTGCTCCTCCTTAGAACACCTGGCCGACCAGAAGCTC
ATC
CCAGAGTTCATTAAGAAGGTGCAGGAGGCCGCCAGTCAGGGCTTGAAGTTTGTTAGCGTGGTGCCCC
AG
TACCAGCCCTCGGTGAGCTCAGCAGGCAGCCGGCGTCTCAAGCCTGTTGCCAACAGTGTTGAAGATGC
C
AGGGATGTGAAATGCACCTTAGGGGACCGTTCATCCTTGGAAAATGATACTCCGAAGGCTGCAGAGACG
GAT
GCTGCCACTGCAGGAGTGAACCGAAGACCGGAGACCAAACCAGGATCCACAGGGGACGTGCCCAGTG
CC
CAGCAGCCTGGCATTCCCTCTCCCTCGGCAGAGAATGAGGCTGGCGAGTTTCCACTGCGGGGTTTGCA
G
CCAGCACTGGATAGATCAGAGGGCGACCCCTCAAATGGGCCTGAAGAGCTGCCCTCCAGGAAGATGGAG
ATC
TTCGCCTTTTTCAACAGACCGAAGAGCCAGCAGAAATGTCGGCAGTACTACCCTGTCACCATCCCCC
TC
CAGGTCTCCAAGAACGGCCAGACAGTGAGCAGTCTAGACGCCAGCTGGCTGGAACACATGAGTGACCA
T
TTCCGGAAAGGCGGTGTGCTGGTGAACGCCGTCTTCCAGCTTGGCATGGCCAATGATTCCTTCTATGGC
CTG
ACAGATGGAGTATTCATCTTTGAAGCTGTTTCCACAGAAGATAACAGAACCACACAGGGCTATGACG
CT
ATTGTTGTGGAACAATGGACAGTCCTAGAAGGTACAGAGGTACAGACCGACTACATGCCCCTGCTGAA
C
TCGCTGGCGGCCTACGGATGGCAGCTCACCTGTGTGCTGCCAACGCCTATACTCAAGACTACCAGGGAA
GGG
AACGTGTCCACCAAGCAGATTGTGTTTCTTCAGAGACCATGTCTACCTCAGAAAACCAAGAAGAGGG
AA
TCTAAGTTCCAGTGGCGATTCTCCCGGAACGAGATCCACGGCAGGCAGACAAGGAAATCCAAAGGGAA
A
CTCAGTGCCAGCAACAAGCAGCAAGCAGAAGAGAATGAGAAGAATCTGGAAGACCAGTTCTCCAAGGCT
GGA
GATGTGGGAAACTGTGTGCTGGGGGCACCGCAGTGGGGCAGAGCCTCTGAGGTCAGGGAGCAAAGGC
AG
GGCTCAGCAGCTGTGCAGAATGGTCCCGCTGGCCACAACAGGGACTCGGTGGCCCTTAGGCACTCGAA
T
CCCAGAGCTGAGGCTGAGCTTGCTGCAGGCCCCACTCCAACAGAAGCAAATTGA


Translation (554 aa):
MGCSLNKLEKREEKRPGNIYSTLKRPQVETKVDVTYEYCFLEFTTLTAAELPRSSATRLASLRDLPDQLL
E
LYQQGFSLAALHPFVQPTRRQEKILLEHIFRAILVKKTN
RSQKAELHDEGYTLELDYCSSLEHLADQKL
I
PEFIKK
VQEAASQGLKFVSVVPQYQPSVSSAGSRRLKPVANSVEDARDVKCTLGDRSSLENDTPKAAET
D
AATAGVNRRPETKPGSTGDVPSAQQPGIPSPSAENEAGEFPLRGLQPALDRSEGDPSNGPEELPSR
KME
I
FAFFNRPKSQQKCRQYYPVTIPLQVSKNGQTVSSLDASWLEHMSDHFRKGGVLVNAVFQLGMAN
DSFYG
L
TDGVFIFEAVSTEDNRTTQGYDAIVVEQWTVLE
GTEVQTDYMPLLNSLAAYGWQLTCVLPTPILKTTRE
G
NVSTKQIVFLQRPCLPQKTKKRESK
FQWRFSRNEIHGRQTRKSKGKLSASNKQQAEENEKNLEDQFSKA
G
DVGNCVLGAPQWGRASEVREQRQGSAAVQNGPAGHNRDSVALRHSNPRAEAELAAGPTPTEAN




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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