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Report for CCDS40371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40371.1 Public Mus musculus 8 Armc6 23 108 98 CCDS HistoryNCBI Gene:76813Re-query CCDS DB by CCDS ID:40371.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019679.11 ENSMUSP00000019679.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019679.11Link to Ensembl Protein Viewer:ENSMUSP00000019679.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019679Re-query CCDS DB by Protein ID:ENSMUSP00000019679
Original member Current member NCBI NM_133972.2 NP_598733.2 Accepted alive Link to Nucleotide Sequence:NM_133972.2Link to Protein Sequence:NP_598733.2Re-query CCDS DB by Nucleotide ID:NM_133972Re-query CCDS DB by Protein ID:NP_598733Link to BLAST:NP_598733.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598733.2 468 Q8BNU0-1 468 100% 0 0

Chromosomal Locations for CCDS 40371.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70220665 70220877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70222106 70222243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70222518 70222649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70223544 70223689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70224900 70225473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70229528 70229610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70231280 70231400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGCTTCCAAGCGCATCACCCAGGAAACCTTTGATGCTGCAGTGCGGGAGAACATTGAGGAGTTTGAGA
TGGGCACTGAGGAGGCCATTCGAGAGGCTGTGGAGCAGTTTGAATCACAAGGGGTTGATCTGAGCAACAT
TGTGAAGACAATACCGAAAGTATCACTGGATGGCCTTCAGGAGCCCACACATAGTGTCCTTCAGGCCCTT
AACGATCTGCAGGAGTCCCTGACTGGCTCTCGGCTCCAGGAGGTGTCAGCCCACCTTGTCCGCTTCTGTG
ACCAGTGCAAGCAGCAGAAGGCCAGCCGCTACCTGGCAGCCCAGAAGGGAGCCTACCCAATCCTCCTGGC
TGCCTGGCAGCTGGCTGCCACTAGCAACCAGGGTCTTCTGCTCCAGGCTCTCAATGCTCTGGCAGTGCTG
ACTGATGGCCAGCCTGACCTCCTGGATGCCCAGGGCTTGCATCTTCTCGTGGCCACGCTAGCACAGAATG
CCGCCAACACTGAACTCACGTGCTGTGGGATTCGCTGCGTGCGCCATGTCTGCCTAAAGCACGAACAGAA
TCGGCAGGACTTGGTGAAAGCTGGCGTGTTGCCCCTGCTCACAGCGGCTATTACACAGCATGGCCAGCAC
GCCGATGTGGTCAGGGAGGCCTGCTGGGCCTTGCGGGTCATGACCTTTGATGATGATATCCGAGTGCCCT
TTGGCCATGCCCATGAGCACGCCAAGATGATTGTTCAGGAGAACAAAGGCCTGAAGGTGCTCATTGAGGC
TGCCAGAGCATTCTCTGACAACCCAGGGGTCCTGAGCGAACTCTGCAGCACCCTATCCCGCCTGGCTGTT
CGGAATGAATTCTGCCAGGAGGTTATAGACCTCGGAGGCCTTGGCATCCTTGTGACCCTGCTGGCTGACT
GCAATGACCACCAGGACCTCGTGAAGCAAGTTCTCAGTGCCCTGAGGGCTATCGCAGGCAACGACGACGT
AAAGGATGCCATTGTCCGGGCAGGTGGTACGGAGTCCATTGTGGCTGCTATGACTCGGCACCTGGCCAGC
CCCCAGGTGTGTGAGCAAAGCTGCGCCGCACTCTGCGTCCTAGCTCTTCGCAAGCCAGACAACAGCCGGG
TCATTATTGAGGGCGGCGGGGCGCTGGCTGCTCTGCAGGCCATGAAGGCGCATCCACAGGAGGCTGGTGT
CCAGAAACAGGCTTGCATGCTGATCCGAAACCTGGTGTCCCGCAGCCAAGTCTTCTCCAAGCCCATCCTG
GACCTGGGGGCAGAGGAGCTCATTTTGCAAGCCCGAGCTGCTCACCCAGACTGTGAAGATGTGGCTAAGG
CCGCATTGCGAGACCTAGGCTGCCGTGTGGAGCTTCGTGAACTGTGGACAGGAAAGAAGGGTGACCTGGC
TCTATGA

Translation (468 aa):
MASKRITQETFDAAVRENIEEFEMGTEEAIREAVEQFESQGVDLSNIVKTIPKVSLDGLQEPTHSVLQAL
NDLQESLTGSRLQEVSAHLVRFCDQCKQQKASRYLAAQKGAYPILLAAWQLAATSNQGLLLQALNALAVL
TDGQPDLLDAQGLHLLVATLAQNAANTELTCCGIRCVRHVCLKHEQNRQDLVKAGVLPLLTAAITQHGQH
ADVVREACWALRVMTFDDDIRVPFGHAHEHAKMIVQENKGLKVLIEAARAFSDNPGVLSELCSTLSRLAV
RNEFCQEVIDLGGLGILVTLLADCNDHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRHLAS
PQVCEQSCAALCVLALRKPDNSRVIIEGGGALAALQAMKAHPQEAGVQKQACMLIRNLVSRSQVFSKPIL
DLGAEELILQARAAHPDCEDVAKAALRDLGCRVELRELWTGKKGDLAL


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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