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Report for CCDS18654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18654.1 Public Mus musculus 4 Ago4 23 108 98 CCDS HistoryNCBI Gene:76850Re-query CCDS DB by CCDS ID:18654.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084289.4 ENSMUSP00000081312.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084289.4Link to Ensembl Protein Viewer:ENSMUSP00000081312.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000084289Re-query CCDS DB by Protein ID:ENSMUSP00000081312
Original member Current member NCBI NM_153177.3 NP_694817.2 Accepted alive Link to Nucleotide Sequence:NM_153177.3Link to Protein Sequence:NP_694817.2Re-query CCDS DB by Nucleotide ID:NM_153177Re-query CCDS DB by Protein ID:NP_694817Link to BLAST:NP_694817.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694817.2 861 Q8CJF8-1 861 100% 0 0

Chromosomal Locations for CCDS 18654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126493223 126493331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126496749 126496948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126497211 126497312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126506744 126506878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126507011 126507326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126508348 126508507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126509951 126510135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126511400 126511533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126511726 126511854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126511999 126512118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126512520 126512667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126515887 126515974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126516837 126516971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126517070 126517206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126517376 126517557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126520191 126520311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126525998 126526163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126533185 126533203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2586 nt):
ATGGAGGCGCTGGGACCCGGACCTCCAGCCAGCCTCTTCCAGCCACCTCGGCGTCCTGGCCTTGGAACCG
TTGGGAAACCAATTCGACTGTTAGCCAATCATTTTCAGGTTCAGATCCCTAAAATAGATGTGTATCACTA
TGATGTGGATATTAAACCAGAAAAACGGCCTCGTAGAGTCAACAGGGAGGTGGTAGACACTATGGTGCGG
CACTTCAAGATGCAGATATTTGGAGATCGGCAGCCTGGCTACGATGGCAAAAGAAACATGTACACGGCAC
ACCCACTGCCAATCGGACGGGATAGGATTGATATGGAGGTGACCCTCCCAGGTGAGGGTAAAGACCAAAC
TTTCAAAGTGTCTGTGCAGTGGGTGTCAGTTGTGAGCCTTCAGCTGCTTTTAGAAGCTTTAGCAGGACAC
CTGAATGAAGTCCCAGATGACTCAGTACAAGCACTTGATGTGATTACAAGGCATCTCCCCTCTATGAGGT
ACACTCCAGTAGGCCGGTCTTTTTTCTCACCTCCTGAAGGTTATTACCACCCTCTGGGAGGGGGCAGAGA
GGTTTGGTTTGGCTTTCATCAGTCTGTGAGACCTGCCATGTGGAATATGATGCTCAATATTGATGTATCT
GCAACTGCTTTCTACCGGGCTCAACCTATCATTGAGTTCATGTGTGAGGTTTTAGACATTCAGAACATCA
ATGAGCAGACAAAACCTCTAACAGACTCCCAGCGTGTCAAGTTTACCAAAGAAATTAGGGGTCTTAAGGT
TGAGGTGACTCACTGTGGACAGATGAAACGAAAATATCGAGTTTGTAATGTGACAAGACGGCCAGCCAGT
CATCAAACCTTCCCTTTGCAGCTAGAGAATGGCCAAGCTATGGAATGTACAGTGGCTCAGTATTTTAAGC
AGAAGTATAGTCTGCAGCTGAAACACCCCCACCTTCCCTGCCTTCAAGTGGGGCAAGAGCAAAAGCATAC
CTACCTACCACTTGAGGTCTGTAATATAGTGGCAGGACAGAGATGTATAAAGAAGCTCACAGACAATCAG
ACATCCACCATGATCAAAGCCACGGCAAGATCTGCTCCTGACAGACAGGAGGAAATCAGTAGACTGGTGA
AGAGCAACAGCATGGTGGGTGGACCTGACCCATACCTGAAGGAATTTGGGATTGTTGTGCACAACGAGAT
GACAGAGCTCACAGGCAGGGTGCTTCCGGCTCCAATGCTGCAGTATGGAGGCCGGAATAAAACAGTAGCC
ACACCCAGCCAGGGTGTCTGGGACATGCGAGGAAAACAGTTTTATGCTGGCATTGAAATTAAAGTATGGG
CAGTGGCTTGTTTTGCGCCTCAGAAACAATGTAGGGAAGATTTGCTAAAGAGTTTCACTGACCAACTTCG
TAAAATCTCCAAGGATGCAGGGATGCCCATCCAGGGTCAGCCATGTTTCTGCAAGTATGCTCAAGGTGCA
GACAGCGTGGAGCCCATGTTTAAACATCTGAAAATGACATATGTGGGCCTGCAGCTAATAGTGGTGATTT
TGCCTGGGAAGACACCAGTATATGCGGAGGTGAAGCGTGTTGGAGATACCCTTCTAGGTATGGCCACACA
GTGTGTCCAGGTCAAAAACGTTGTGAAGACCTCGCCCCAGACCCTTTCCAACCTTTGCCTGAAGATGAAC
GCAAAGCTGGGAGGGATTAACAATGTGCTTGTGCCTCACCAAAGGCCCTCAGTGTTCCAGCAGCCTGTCA
TCTTTCTGGGAGCAGATGTCACTCATCCGCCTGCTGGGGACGGGAAGAAGCCTTCTATTGCAGCCGTGGT
GGGCAGCATGGACGGCCATCCCAGCCGGTACTGTGCCACAGTCCGGGTACAGACATCTCGACAGGAGATC
ACCCAGGAGCTCCTCTACAGCCAGGAGGTCGTGCAGGACCTGACGAGCATGGCTCGGGAGCTGCTGATTC
AATTCTATAAGTCCACGCGCTTCAAGCCCACACGCATCATCTACTACCGCGGAGGGGTATCCGAGGGACA
GATGAAGCAGGTAGCTTGGCCGGAGCTAATAGCAATTCGAAAGGCATGTATAAGCTTGGAGGAAGACTAT
CGGCCGGGAATAACTTACATTGTGGTGCAAAAGAGGCACCACACACGACTCTTCTGTGCAGATAAAATGG
AAAGGGTGGGGAAAAGTGGCAATGTCCCAGCAGGCACCACAGTGGATAGCACCGTCACACACCCGTCTGA
GTTTGACTTTTACCTCTGTAGTCATGCAGGAATTCAGGGAACCAGCCGTCCTTCACATTACCAGGTCTTG
TGGGATGACAACTGCTTCACTGCAGATGAACTCCAGCTACTGACTTACCAGCTCTGTCACACCTACGTGA
GGTGCACACGCTCCGTCTCCATTCCTGCCCCTGCATATTATGCCCGGCTTGTGGCATTCCGGGCAAGGTA
TCATTTGGTGGATAAAGATCATGACAGTGCGGAAGGCAGTCACGTGTCAGGACAGAGCAACGGCCGGGAT
CCTCAGGCCTTGGCTAAGGCTGTGCAGATCCACCATGATACCCAGCACACTATGTATTTTGCCTGA

Translation (861 aa):
MEALGPGPPASLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVR
HFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRIDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGH
LNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVS
ATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPAS
HQTFPLQLENGQAMECTVAQYFKQKYSLQLKHPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQ
TSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVA
TPSQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGA
DSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKMN
AKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEI
TQELLYSQEVVQDLTSMARELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDY
RPGITYIVVQKRHHTRLFCADKMERVGKSGNVPAGTTVDSTVTHPSEFDFYLCSHAGIQGTSRPSHYQVL
WDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRD
PQALAKAVQIHHDTQHTMYFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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