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Report for CCDS21384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21384.1 Public Mus musculus 7 Ticrr 23 108 98 CCDS HistoryNCBI Gene:77011Re-query CCDS DB by CCDS ID:21384.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21384.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035977.8 ENSMUSP00000041377.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035977.8Link to Ensembl Protein Viewer:ENSMUSP00000041377.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035977Re-query CCDS DB by Protein ID:ENSMUSP00000041377
Original member Current member NCBI NM_029835.1 NP_084111.1 Accepted alive Link to Nucleotide Sequence:NM_029835.1Link to Protein Sequence:NP_084111.1Re-query CCDS DB by Nucleotide ID:NM_029835Re-query CCDS DB by Protein ID:NP_084111Link to BLAST:NP_084111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084111.1 1889 Q8BQ33 1889 100% 0 0

Chromosomal Locations for CCDS 21384.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 79660340 79661002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79665663 79665939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79667660 79667898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79669448 79669682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79670866 79670995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79675272 79675408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79677227 79677445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79679015 79679166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79680908 79681008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79681810 79681903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79681990 79682069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79682249 79682476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79682956 79683052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79684204 79684261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79685777 79685938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79688226 79688316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79689908 79689966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79690872 79691003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79691822 79691979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79693701 79695822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79695935 79696060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79696654 79696763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5670 nt):
ATGGCCTGCTGTCACAAAGTGATGCTGCTGGTGGACACAGCGGGCGTCTCTGCTCCTCATAGCCCGGCCC
GA
CGCGCCGCCCTCCGGCTCCTCACTTACCTGAGCTGCCGCTTCGGCCTTGCCAGGGTCCACTGGACCTT
C
AAGTTCTTCGACTCTCAGGGGGCACGGAGCCGGCCCTCCCGCGTGTCCGACTTCCGCGAGCTGGGGAGC
CGC
TCCTGGGAGGACTTCGAGGAGGAGCTGGAGGCCAGGCTGGGGGATCGCCCTCCCGGAGCTCACCTGC
CG
GGCCCGACGCCCAGAGCCACCCACACGCACGGTGCCCTGATGGAGACGCTGCTCGACTACCAGTGGGA
C
CGGCCGGAGATCACGTCGCCCACCAAGCCGATCCTGCGGAGTAGCGGCAGGAGGCTGCTGGACGCCGAC
GGC
GAGGCCAGGGAGGCCCAGGCCGCGCTCGGGGGCTTTGGGAACGCCGTCTTCCTCCTGGCGCCCTGTC
CT
CACTCGCAGAGGGAGCTGCTTCAGTTCGTGTCCGGGTGCGAGGCACAGGCTCAACGCGTGCCGCTCAC
C
CCCAAGCAGGTGATGGAGAAGGTGTTGCCCAAGAGAGTCCAAGAGGTTATGATCGCCCGAAATATCACC
TTG
TACTGGGTGGACACCACCGAGCGATCTAAGTTGTGGGCTTCCCCAGACCATGTTGGATACTGGACAG
TG
TGTGAGCTGCTACACCATGGAGGAGGTACCATCTTGCCAGCTGAAACTTGGAGCCTGGGATTTACTAA
A
GCCAGGGAAACAGTGCTGCCATGTGGTGGCGAGCTGTCACACAAACCTCACCCCTCCCCGTGGATCTCA
GCT
CTGCCAATAGATGCCACTGTAAACTGTTTGCTGTATAATTCTGAGTATGAAGCCTCATTTCCACGAA
TT
GAAGGAACATTATTTCTCCCTGTTCAAGGCAAAGAAATTGAAGAAACATGGGCAATCTCCCTGGAGCC
T
TTAGCCATGCATCAGAGACATTTTCAAAAGCCAGTCAGAATTGTCCTAAGAGGCTCAGTGGCACAGTGG
TCT
CTCCCAGTGAGTAGTGCTTTAGGCACTGACAGTTGGATGCTACAAAGTCCAGAGGAACACAGGTCAA
CT
CAAAGGCTGTTGTTTCAGGAGCTGGTAAGCAGGCTGACTGCTGAAGAATTCCATCTGGTTGCCAGTGT
G
GATCCTGGTGAAGGCTGGCCCCCCATAACGGGAATTATTTCCCCATTCTCTGCCAATGCCATGATTCTC
ACA
GTGTTCCGAGCCAAAGAAGCTGAATTTCAAAGCCATTTTCTCCAAACAGCTGCGACTGAAGGTTCCC
AG
GATACAGCTTCCCTTTTCTCAGATGTTGTAGATAGTGTCCTGAATCAGAGTCATAATTTATTTGAAGA
C
CCTGCGTCTTCTGCCCCCTGTGTTCCAGAGTGGGTCCAGCAGGAGCTTAGTCATACCAGCTCCTGGAGT
CCA
GCTCTTGTCGAAAAGTGGTTTCCTTTCTCCAACGCCAGTGGTGCTACTTCAGACTTGATGGAATCAT
TT
TGGTTGTTACACGCTGCCTCACCTGATAATGATGAATCCTCCAAAACCGAAAGTGAACTAACACGCTG
C
CTCTCTGAGCTCTACCAGAGATCTCACGAAGAATCTACTGTAGTCAATCAAGAACGCAGCAGAAAGAAA
C
GT
GGTATCCCTCGAACTCCAGTGAGACAGAAGATGAATACCATGTCCCGCTCCTTGAAGATGTTGAATG
TG
GCAAGGCTAAATGTAAAGGCTCAGAAATTACATCCAGATGGTAGTCCAGACACGGCTGTAGAGAAAGG
G
CTCCAGAAAGCTGTCATTGGCAGAACAGCAGACAAATTGGAAGATAGAGGAAGGATATTAAGAAGTTCT
AAA
CTTAAAGAATTTAAAACCGAGGAGGAGCTTCTGGCTTACATACATGACAACTACCAAAAGGCTGTGG
CT
ACGGAAGAAATCACATTGTATTCATGTGCACAAAATATGGTCTCAACCATTAAAATGTTCCTAAAATC
A
AAGGACATCAAGGAATTAGAAGTGGCCTGCCTGAGTCATGTGAACAGTAACCTCTTAAAAACCAGCAAG
ACC
CTTAGACAGAACCTAGCCGGAAAGATGGATACAGAGGACAAAGTCGGAGAGTGCCAGCTTCAGGTAT
TT
CTTCGTCTGGAGATGTGTGAGCAGTGCCCCTCAGTCCTGGACCGCCCAGATGAGGTGGAGCGCATAGT
G
GAGGAGGTGACAGATTTGCTGCGTCTGGTGTGTCTCACTAAGGACTCAGCGTACCTGTCAGAGTTTCTG
GAG
GAGATCTTGAGATTGTATATTGGCTCCATCCCCGGGACAATTGGACAACTCTACCACAGCCTGGGGT
TA
AAAATTCCTCAGAAGCTGGCTGGAGTCCTTCCTACAGGGTTTTTCAGTGATGATTCTATGTCTCAAGA
G
AGCATGTCACCACCTCCCTCATCAAGTACTCACAGATCAGTGTCGGCCATTACTGAGTCTGAGCAGCTG
GAG
GAGCTTCGGACCAGATCAGCCAAGAAGAGAAGGAAAAATGCACTAATAAGACATAAAAGTATTGCAG
AG
ATTTCCCAGACTCTTCGACAAATTGAAGTTCCCAAAGTGTCCAAGAGAGCTACAAGAAATGAGAACTC
C
CACTCTGCTTCCATACAGCTGCCAGTCCCGAGGAAAGACACAATACAGGAAGTAACAAAAGTTCGAAGA
AAC
CTCTTCAACCAGGAAATGCTTTCTCCTTCAAAGAGGGGGCTAAAGAAGGGGCTGCCTCGCAGCCATT
CT
GTATCTGCTTTGGAATGTCTCCACCATAAACAGGACAAGTTCAAGAAGACCAAAAGCAGCACATTTCA
G
GGTTATTGCAAACTGCTGACTAAGAGTGTGGCTGAGACCCCAGTCCACAAGCAAATCTCCAGGAGGCTG
CTC
CATAGACAAATCAAGGGCAGGTCTTCTGATCCTGGTCCTGATATTCATGTAGTTGAAGAGTCTCCTG
AA
AAAGAGGATGAAATGACTTTGAGAAGAAGTCCTCGAATCAAGCAGCTGTCATTTAGCAGAACGAACTC
T
GGCTCCTTCTATTCTGTATCTCAGCCGAAATCTCGAAGTGTGCAAAGAATCCACTCGTCCCAGCAGGAG
TCA
GAACAAAGAGAAAATTTTCCAGTTCAAAGTATTCAGTCTCCTAAAACACTTCTTTTTGGGGCATTGT
CT
GAGATTCCCAGCTCCTCTAAGAAGGGTTCAGCCCAAATTAAGAGATCCTTAAGAAGCATGTTGGATTC
T
GAGATATCTACATCTTACGAGACTCCCAAAAAGAGTAACCAGAAATCTCCAAGCTTTTCTAAAACTACA
CCA
AGAAGATTCCCTCGTACAGCACAGACCTTACTATACACTCCAGAAAGACTACAAAACTCCCCTACAG
AA
ATGACATCAGCTGAAGGGACCATTTCTGAAGCAACCATAAAAACCCCCTCCTCACACGGTTACAACTC
A
CCATTTGCATCAAAAGTCACTTCTCAAAAGACAGTCTCCCCAGCAAAAGAAGAGACCTCTCCTCCCCTC
ACA
AAGCTACCCAGCACACCCAGAGAGTCTGATGTCCAGCCACCTCAATGTTCGTCAGACTGCACATGGC
CA
CACTCAGTGAATTCCAGTCCAGAAGGTCCTTATTACCCAGCGTCCCCACCTCCTATGGCTGGCCAGGC
C
AGGAGTCAGTGTCTGACCCCTATAAGATACTCCTTCAGAACCCCTCCACGTACAGCCCTTGCTGGCACG
TCT
AAGCAGCAGGAGCACCAAGAGCTCCCTCTCCCCAGGGCCTCTCAGACACAAGAACCTCCACAGGGAC
TG
GAGAAGAAAGCTCTCAAAATCCCAAAGAAACCAGCACACACAAGTACTTCACCTCTTTCTCCAGAGGA
A
CATTATTCTGGATGTGATGTCTCCCCACATCAACCTAGGAACTCTTTGTCAGCCTCCCCTCCTCCTGGA
GAA
CTGAATTGGAAAGAACACCAGACATCACCCAGTGTAACTTCATCTGTCTCTTGTCCTGTTCCTTCAA
CT
CCTCCTAGAACCCCACAGAGAATGACCTGCCCCATACCACCTTCTCCACCATCCAAGCTTCGGAGATC
A
TGTAGAAAGAAGTCCTGTCCTCCTCAGGACTTCCCAGAGTGCCATCCTGGACCCTCTGCTGCTCCCGTG
CTT
AGCTCAGCCACCAGCCCAGGAGCTGTCACAGGCTCTAGAGAGGAGCAGTCTCAGTTTTCTGAAGGAC
AG
AGTTACCTAGGCACTGGTTTCAGAAGTGACTGTCATGTGTCCTCTCCTGTGCTCACTGCAAGTGACAC
A
AAGTGCTTGCCACTGATTGATGAAGCCCAACTCCATGGGCTTAAAAACCAAGAGGTAAAAAGTGGCATC
TTG
CCAGGGGAAGAAGGTGAGGAACCAGAGAGCACTATTGCCGACGAGCTTCCCTCTGTGTCTGACCCTG
GG
ATTCTTGTACCTGCGCCTTCCTCTGTGTCTAGCTCCTCTGAGCTGCTGCCCTACCCCCTGTGCTGTAC
A
GCAGACGGAAAGCAGAGGCAAGATGCTGCTCAGCAGGGGAGTCCACGAGCTTCCGAGGCCACCAGCAGC
CCT
CAGACCTACGAAGTTGAGCTGGAGATGCAAGCTTCTGGCCTTCCCAAGCTCCGGATTAAAAAAATAG
AC
CCTGGAGTTCTTTTGGAAGCTGAGGCCCTAGGAAAGGAAGCCCCCCTGGGAGAGGAGGGTGCCCTCCC
T
GCTCTCTGTATGCCCAAGGCCAGCAAGTCCTCCGGGAGAACTGAGCACCCTTACTTGTCACCCCCTTGT
CTC
CGCCCCTCACACAGCACACCTGGCAAGAATGGAGGTCAAACCTTCATCTGCCAATCTTGTACTCCCT
CT
CGCTGTCCCCCCAGTACCCCCTCTCCATTTCAAGCAGATGCTGGGGTTTCTTGGACACCATCCCCTAA
G
CAAAGTGGGAAGACCACTCCTGAAATTATCAAAGACTGGCCCCGCAGGAAGAGGGCAGTGGATTGCAGT
GCT
GGACCCTCTGCTGGGAGAGGCGAGGCCAGTATGGACCTTCCTGGGTCCTTGTCACTGCTTGAGCCTG
AG
CCTGAGGGAAAGGAGCGAAGCCTTGAACAAGACCTCTCTAAGGTTCTCATCTCAGAGGAGTTTGAACT
A
GAGGGGGTGTGTCAGTTGCCAGACCAGTCACCTCCCAAAGACAGTGCCTCTGTGACAGAGGAAACCTCC
TGG
GGACAGTTTGGATTAGGCAGAAAGAGATTCCTGTCCGCCAAGGAAGAATCTGAATACAAAGTCAAAA
GG
GTCTGTGATTCCCTGAGTGAGGATCCCCAAGCTAGCAAGCAGAAAGAGTGCTCTCCACGCTGGAGTGC
A
CTACCACTCCACTCAGTAGGGGACGACGAGGTGTTTGTTTCTGGCTCCACCCCACCCTCTGGTTGCATG
GTT
CGAAGCTGTCTCTCTGCCAGTGGTCTGCAGGCCTTGACCCAGTCTCCACTGCTGTTCCAAGGAAGAA
CG
CCCTCCTCTCATAGCACGGACACCAGAGATGAGGAAGTGGATGTGTTCCCCTCTACTGCTGAAGAGTC
T
CCGTTCAGCCACACCCTCTCCCGGAAACGGCCTTTCAGAACCTACACGAGAAAGAAGCTTATTAGCTAG


Translation (1889 aa):
MACCHKVMLLVDTAGVSAPHSPARRAALRLLTYLSCRFGLARVHWTFKFFDSQGARSRPSRVSDFRELGS
R
SWEDFEEELEARLGDRPPGAHLPGPTPRATHTHGALMETLLDYQWDRPEITSPTKPILRSSGRRLLDAD
G
EAREAQAALGGFGNAVFLLAPCPHSQRELLQFVSGCEAQAQRVPLTPKQVMEKVLPKRVQEVMIARNIT
L
YWVDTTERSK
LWASPDHVGYWTVCELLHHGGGTILPAETWSLGFTKARETVLPCGGELSHKPHPSPWIS
A
LPIDATVNCLLYNSEYEASFPRIEGTLFLPVQ
GKEIEETWAISLEPLAMHQRHFQKPVRIVLRGSVAQW
S
LPVSSALGTDSWMLQSPEEHRSTQRLLFQELVSRLTAEEFHL
VASVDPGEGWPPITGIISPFSANAMIL
T
VFRAKEAEFQSHFLQTAATEGSQDTASLFSDVVDSVLNQSHNLFEDPASS
APCVPEWVQQELSHTSSWS
P
ALVEKWFPFSNASGATSDLMESF
WLLHAASPDNDESSKTESELTRCLSELYQRSHEESTVVNQERSRKK
R
GIPRTPVRQKMNTMSRSLKMLNVARLNVKAQKLHPDGSPDTAVEKGLQKAVIGRTADKLEDRGRILRSS
K
LK
EFKTEEELLAYIHDNYQKAVATEEITLYSCAQNMVSTIKMFLKSKDIKELEVACLSHVNSNLLKTSK
T
LRQNLAGKMDTEDKVG
ECQLQVFLRLEMCEQCPSVLDRPDEVERIVEEVTDLLRLVCLTKDSAYLSEFL
E
EILR
LYIGSIPGTIGQLYHSLGLKIPQKLAGVLPTGFFSDDSMSQESMSPPPSSSTHRSVSAITESEQL
E
ELRTRSAKKR
RKNALIRHKSIAEISQTLRQIEVPKVSKRATRNENSHSASIQLPVPRKDTIQEVTKVRR
N
LFNQEMLSPSKRGLKKGLPRSHSVSALECLHHKQDKFKKTKSSTFQ
GYCKLLTKSVAETPVHKQISRRL
L
HRQIKG
RSSDPGPDIHVVEESPEKEDEMTLRRSPRIKQLSFSRTNSGSFYSVSQPKSRSVQRIHSSQQE
S
EQRENFPVQSIQSPKTLLFGALSEIPSSSKKGSAQIKRSLRSMLDSEISTSYETPKKSNQKSPSFSKTT
P
RRFPRTAQTLLYTPERLQNSPTEMTSAEGTISEATIKTPSSHGYNSPFASKVTSQKTVSPAKEETSPPL
T
KLPSTPRESDVQPPQCSSDCTWPHSVNSSPEGPYYPASPPPMAGQARSQCLTPIRYSFRTPPRTALAGT
S
KQQEHQELPLPRASQTQEPPQGLEKKALKIPKKPAHTSTSPLSPEEHYSGCDVSPHQPRNSLSASPPPG
E
LNWKEHQTSPSVTSSVSCPVPSTPPRTPQRMTCPIPPSPPSKLRRSCRKKSCPPQDFPECHPGPSAAPV
L
SSATSPGAVTGSREEQSQFSEGQSYLGTGFRSDCHVSSPVLTASDTKCLPLIDEAQLHGLKNQEVKSGI
L
PGEEGEEPESTIADELPSVSDPGILVPAPSSVSSSSELLPYPLCCTADGKQRQDAAQQGSPRASEATSS
P
QTYEVELEMQASGLPKLRIKKIDPGVLLEAEALGKEAPLGEEGALPALCMPKASKSSGRTEHPYLSPPC
L
RPSHSTPGKNGGQTFICQSCTPSRCPPSTPSPFQADAGVSWTPSPKQSGKTTPEIIKDWPRRKRAVDCS
A
GPSAGRGEASMDLPGSLSLLEPEPEGKERSLEQDLSKVLISEEFELEGVCQLPDQSPPKDSASVTEETS
W
GQFGLGRKRFLSAKEESEYKVKRVCDSLSEDPQASKQKECSPRWSALPLHSVGDDEVFVS
GSTPPSGCM
V
RSCLSASGLQALTQSPLLFQGRTPSSHSTDTR
DEEVDVFPSTAEESPFSHTLSRKRPFRTYTRKKLIS



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser