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Report for CCDS36041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36041.1 Public Mus musculus 10 Cep83 23 108 98 CCDS HistoryNCBI Gene:77048Re-query CCDS DB by CCDS ID:36041.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36041.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020212.5 ENSMUSP00000020212.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020212.5Link to Ensembl Protein Viewer:ENSMUSP00000020212.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020212Re-query CCDS DB by Protein ID:ENSMUSP00000020212
Original member Current member NCBI NM_029852.2 NP_084128.2 Accepted alive Link to Nucleotide Sequence:NM_029852.2Link to Protein Sequence:NP_084128.2Re-query CCDS DB by Nucleotide ID:NM_029852Re-query CCDS DB by Protein ID:NP_084128Link to BLAST:NP_084128.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084128.2 692 Q9D5R3-1 692 100% 0 0

Chromosomal Locations for CCDS 36041.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 94718974 94719119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94719592 94719742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94725647 94725739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94728591 94728722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94737773 94738024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94740057 94740188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94748941 94749055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94750259 94750403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94750510 94750659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94766442 94766517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94768819 94768976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94770945 94771074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94786744 94786847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94788647 94788836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94789704 94789808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2079 nt):
ATGGACACATTTCCTAGCCTATTTCCACCTGGAGGAGATAGTAGGCTGAATCCTGAGCCTGAGTTCCAAA
ATATGTTAATTGATGAAAGGGTACGCTGTGAACATCATAAACATAATTATCAGGCTCTGAAAATTGAACA
CAAAAGGTTGCAGGAAGAATATGTAAAATCACAAAATGAACTTAAACGTGTATTAATTGAAAAGCAAGCA
AGCCAGGAAAAATTCCAACTGCTCCTTGAAGACTTAAGGGGAGAATTAGTAGAGAAAGCTAGAGACATAG
AAAAAATGAAACTGCAGGTACTAACACCACAAAAATTGGAATTGGTAAAAGCCCAACTACAACAAGAATT
AGAAGCTCCAATGCGAGAACGTTTTCGGACTCTTGATGAAGAAGTGGAAAGGTACAGAGCTGAGTATAAC
AAGCTGCGCTACGAGTATACATTTCTCAAGTCAGAGTTTGAACACCAGAAAGAAGAGTTTACTCGGGTTT
CAGAAGAAGAGAAAATGAAATACAAGTCAGAGGTTGCACGACTGGAGAAGGACAAAGAGGAGCTACATAA
CCAGCTGCTTAGTGTTGATCCCACGAGAGACAGCAAACGAATGGAGCAACTTGTTCGAGAAAAAACCCAT
TTGCTTCAGAAATTGAAAAGTTTAGAGGCTGAAGTAGCAGAATTAAGGGCTGAGAAAGAAAATTCTGGTG
CTCAGGTAGAAAATGTCCAAAGAATACAGGTGAGGCAGTTGGCTGAGATGCAGGCTACACTCAGATCCTT
GGAGGCTGAAAAGCAGTCAGCTAAACTACAAGCTGAGCGTTTAGAAAAAGAACTACAATCAAGCAATGAA
CAGAATACCTGCTTAATCAGCAAACTGCATAGAGCTGACCGAGAAATCAGCACACTGGCCAGTGAAGTGA
AAGAGCTTAAACATGCAAACAAACTAGAAATAACTGACATCAAACTGGAGGCAGCAAGAGCTAAGAGTGA
GCTCGAAAGAGAAAGGAATAAGATCCAAAGTGAACTTGATGGATTGCAGTCAGACAATGAAATTCTCAAG
TCAACTGTTGAACACCACAAAGCGCTCTTAGTGGAAAAAGATCGTGAATTAATACGTAAAGTACAAGCTG
CCAAGGAAGAAGGTTACCAGAAACTCATGGTCTTACAAGATGAAAAGCTAGAACTTGAGAACAGATTATC
AGACTTAGAGAAGATGAAGGTGGAGCGTGATGTCTGGAGGCAGTCGGAAAAGGAGCAGTGTGAGGAGAAG
CTGCGGGCCTCCCAGATGGCAGAGGAGGCAGCCCGCAGGGAGCTGCAGAGCACTAGGTTAAAACTTCAAC
AACAAATTGTGAATACCGAAAAAGCAGAAAAAGAAAAACTTGAAAATTCTGAACTGAAACAGCAAATCAG
TCATTTGCAGATCCAAGTGACCTCACTGACACAGTCGGAGAACGACTTACTGAATTCAAACCACATGCTG
AAGGACATGGTGGAGAGACTAAAACAAGAATGCCGAAATTTAAGGAGCCAAGCTGAGAAAGCACAACTAG
ACGTTGAAAAGACACTGGAGGAAAAACAGATCCAGTGGTTGGAAGAAAAGCACAAGCTCCATGAGCGAAT
CACAGACAGAGAAGAAAAGTATAACCAAGCCAAGGAAAAGCTACAGCGCGCAGCGACTGCTCAGAAAAAG
AGAAAATCTCTTCATGAGAACAAATTGAAGAGACTACAGGAGAAAGTAGAAGTCTTGGAGGCAAAGAAAG
AAGAACTAGAAACAGAAAACCAGGTGCTAAATAGACAAAATGTTCCATTTGAAGAATATACAAGGCTTCA
AAAACGACTAAAGGACATACAGAGAAGACATAATGAATTTCGAAGTCTAATTTTGGTTCCTAACATGCCT
CCAACAGCATCGATTAGTCCTGCTAACTTCCAGTCCGCAGTGACAGTTCCTGGAGCGGAACTCTCTTTTC
CCCCTCATCTGCAGGAGGAACAACATCAAAGAGAGCTCTCTCTCCTTCGCAAAAGACTGGAAGAACTGGA
GACTACACAAAGAAAACAACTGGAGGAGCTTGGGTCTCCTGGGGAGTGA

Translation (692 aa):
MDTFPSLFPPGGDSRLNPEPEFQNMLIDERVRCEHHKHNYQALKIEHKRLQEEYVKSQNELKRVLIEKQA
SQEKFQLLLEDLRGELVEKARDIEKMKLQVLTPQKLELVKAQLQQELEAPMRERFRTLDEEVERYRAEYN
KLRYEYTFLKSEFEHQKEEFTRVSEEEKMKYKSEVARLEKDKEELHNQLLSVDPTRDSKRMEQLVREKTH
LLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNE
QNTCLISKLHRADREISTLASEVKELKHANKLEITDIKLEAARAKSELERERNKIQSELDGLQSDNEILK
STVEHHKALLVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERDVWRQSEKEQCEEK
LRASQMAEEAARRELQSTRLKLQQQIVNTEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNHML
KDMVERLKQECRNLRSQAEKAQLDVEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKK
RKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNVPFEEYTRLQKRLKDIQRRHNEFRSLILVPNMP
PTASISPANFQSAVTVPGAELSFPPHLQEEQHQRELSLLRKRLEELETTQRKQLEELGSPGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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