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Report for CCDS1771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1771.1 Public Homo sapiens 2 YPEL5 24 110 108 CCDS HistoryNCBI Gene:51646Re-query CCDS DB by CCDS ID:1771.1Re-query CCDS DB by GeneID:51646See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1771.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261353.9 ENSP00000261353.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261353.9Link to Ensembl Protein Viewer:ENSP00000261353.4Re-query CCDS DB by Nucleotide ID:ENST00000261353Re-query CCDS DB by Protein ID:ENSP00000261353
Original member Current member EBI ENST00000379519.7 ENSP00000368834.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379519.7Link to Ensembl Protein Viewer:ENSP00000368834.3Re-query CCDS DB by Nucleotide ID:ENST00000379519Re-query CCDS DB by Protein ID:ENSP00000368834
Original member Current member EBI ENST00000379520.7 ENSP00000368835.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379520.7Link to Ensembl Protein Viewer:ENSP00000368835.3Re-query CCDS DB by Nucleotide ID:ENST00000379520Re-query CCDS DB by Protein ID:ENSP00000368835
Original member Current member EBI ENST00000402003.7 ENSP00000383974.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402003.7Link to Ensembl Protein Viewer:ENSP00000383974.3Re-query CCDS DB by Nucleotide ID:ENST00000402003Re-query CCDS DB by Protein ID:ENSP00000383974
Original member Current member EBI ENST00000402708.5 ENSP00000385278.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402708.5Link to Ensembl Protein Viewer:ENSP00000385278.1Re-query CCDS DB by Nucleotide ID:ENST00000402708Re-query CCDS DB by Protein ID:ENSP00000385278
Original member Current member NCBI NM_001127399.2 NP_001120871.1 Accepted alive Link to Nucleotide Sequence:NM_001127399.2Link to Protein Sequence:NP_001120871.1Re-query CCDS DB by Nucleotide ID:NM_001127399Re-query CCDS DB by Protein ID:NP_001120871Link to BLAST:NP_001120871.1
Original member Current member NCBI NM_001127400.2 NP_001120872.1 Accepted alive Link to Nucleotide Sequence:NM_001127400.2Link to Protein Sequence:NP_001120872.1Re-query CCDS DB by Nucleotide ID:NM_001127400Re-query CCDS DB by Protein ID:NP_001120872Link to BLAST:NP_001120872.1
Original member Current member NCBI NM_001127401.2 NP_001120873.1 Accepted alive Link to Nucleotide Sequence:NM_001127401.2Link to Protein Sequence:NP_001120873.1Re-query CCDS DB by Nucleotide ID:NM_001127401Re-query CCDS DB by Protein ID:NP_001120873Link to BLAST:NP_001120873.1
Original member Current member NCBI NM_016061.3 NP_057145.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016061.3Link to Protein Sequence:NP_057145.1Re-query CCDS DB by Nucleotide ID:NM_016061Re-query CCDS DB by Protein ID:NP_057145Link to BLAST:NP_057145.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120871.1 121 P62699 121 100% 0 0
NP_001120872.1 121 P62699 121 100% 0 0
NP_001120873.1 121 P62699 121 100% 0 0
NP_057145.1 121 P62699 121 100% 0 0

Chromosomal Locations for CCDS 1771.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30156652 30156792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30158619 30158843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGGGCAGAATTTTCCTTGATCATATCGGTGGTACCCGTCTGTTTTCTTGTGCAAACTGTGATACGATCC
TGACCAACCGCTCAGAACTCATCTCCACTCGTTTCACAGGCGCCACTGGCAGAGCATTTCTTTTTAACAA
GGTAGTTAACCTGCAGTACAGTGAAGTTCAAGATCGGGTCATGCTCACTGGCCGCCACATGGTTCGAGAT
GTGAGCTGCAAAAACTGCAATAGCAAACTGGGATGGATCTATGAGTTTGCCACTGAAGACAGCCAGCGAT
ATAAGGAAGGCCGCGTGATCCTGGAACGTGCTCTAGTTCGAGAGAGTGAGGGCTTTGAGGAGCATGTACC
ATCTGATAACTCTTGA

Translation (121 aa):
MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRD
VSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESEGFEEHVPSDNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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