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Report for CCDS36490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36490.1 Public Mus musculus 12 Ptgr2 23 108 98 CCDS HistoryNCBI Gene:77219Re-query CCDS DB by CCDS ID:36490.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000123614.7 ENSMUSP00000115704.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123614.7Link to Ensembl Protein Viewer:ENSMUSP00000115704.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123614Re-query CCDS DB by Protein ID:ENSMUSP00000115704
Original member Current member EBI ENSMUST00000146377.7 ENSMUSP00000119981.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146377.7Link to Ensembl Protein Viewer:ENSMUSP00000119981.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146377Re-query CCDS DB by Protein ID:ENSMUSP00000119981
Original member Current member NCBI NM_001252625.1 NP_001239554.1 Accepted alive Link to Nucleotide Sequence:NM_001252625.1Link to Protein Sequence:NP_001239554.1Re-query CCDS DB by Nucleotide ID:NM_001252625Re-query CCDS DB by Protein ID:NP_001239554Link to BLAST:NP_001239554.1
Original member Current member NCBI NM_029880.3 NP_084156.2 Accepted alive Link to Nucleotide Sequence:NM_029880.3Link to Protein Sequence:NP_084156.2Re-query CCDS DB by Nucleotide ID:NM_029880Re-query CCDS DB by Protein ID:NP_084156Link to BLAST:NP_084156.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239554.1 351 Q8VDQ1-1 351 100% 0 0
NP_084156.2 351 Q8VDQ1-1 351 100% 0 0

Chromosomal Locations for CCDS 36490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84292332 84292368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84295217 84295335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84298011 84298202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84302237 84302407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84305926 84306135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84307776 84307897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84308345 84308432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84310919 84310958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84313937 84314013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGATCATACAAAGAGTGGTATTGAATTCCCGACCTGGGAAAAATGGAAATCCAGTCGCAGAGAACTTCA
GGGTGGAAGAGTTCAGTTTACCGGATGCTCTCAATGAAGGTCAAGTTCAAGTGAGGACTCTTTATCTCTC
GGTGGATCCTTACATGCGCTGTAAGATGAACGAGGACACTGGCACTGACTACTTGGCACCGTGGCAGCTG
GCGCAGGTGGCTGATGGTGGAGGAATTGGAGTTGTAGAGGAGAGCAAGCACCAGAAGTTGACTAAAGGCG
ATTTTGTGACTTCGTTTTACTGGCCCTGGCAAACTAAGGCAATTCTAGATGGGAATGGCCTTGAAAAGGT
AGACCCACAACTTGTAGATGGACACCTTTCATATTTTCTTGGGGCTATAGGTATGCCTGGCTTGACTTCC
TTGATTGGGGTACAGGAGAAAGGCCATATATCTGCTGGATCTAATCAGACAATGGTTGTCAGTGGAGCAG
CAGGCGCCTGTGGATCTTTGGCTGGGCAGATTGGCCACCTGCTTGGCTGTTCCAGAGTGGTGGGAATTTG
TGGAACGCAGGAGAAATGTCTCTTTTTGACCTCAGAGCTGGGGTTTGATGCTGCAGTTAATTACAAAACA
GGGAATGTGGCAGAGCAGCTGCGAGAAGCGTGCCCGGGCGGAGTGGATGTCTACTTTGACAATGTTGGAG
GTGACATCAGCAACGCGGTGATAAGTCAGATGAATGAGAACAGCCACATCATCCTGTGTGGTCAGATTTC
TCAGTACAGTAACGATGTGCCCTACCCTCCTCCACTGCCCCCTGCAGTAGAAGCCATCCGGAAGGAACGA
AACATCACAAGAGAGAGATTTACGGTATTAAATTATAAAGATAAATTTGAGCCTGGAATTCTACAGCTGA
GTCAGTGGTTTAAAGAAGGAAAGCTAAAGGTCAAGGAGACCATGGCAAAGGGCTTGGAAAACATGGGAGT
TGCATTCCAGTCCATGATGACAGGGGGCAACGTAGGGAAACAGATCGTCTGCATTTCAGAAGATTCTTCT
CTGTAG

Translation (351 aa):
MIIQRVVLNSRPGKNGNPVAENFRVEEFSLPDALNEGQVQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQL
AQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTS
LIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKT
GNVAEQLREACPGGVDVYFDNVGGDISNAVISQMNENSHIILCGQISQYSNDVPYPPPLPPAVEAIRKER
NITRERFTVLNYKDKFEPGILQLSQWFKEGKLKVKETMAKGLENMGVAFQSMMTGGNVGKQIVCISEDSS
L


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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