NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37794.1 Public Mus musculus 18 Prelid2 23 108 98 CCDS HistoryNCBI Gene:77619Re-query CCDS DB by CCDS ID:37794.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000235606.1 ENSMUSP00000157706.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235606.1Link to Ensembl Protein Viewer:ENSMUSP00000157706.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235606Re-query CCDS DB by Protein ID:ENSMUSP00000157706
Original member Current member NCBI NM_029942.1 NP_084218.1 Accepted alive Link to Nucleotide Sequence:NM_029942.1Link to Protein Sequence:NP_084218.1Re-query CCDS DB by Nucleotide ID:NM_029942Re-query CCDS DB by Protein ID:NP_084218Link to BLAST:NP_084218.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084218.1 177 Q0VBB0 177 100% 0 0

Chromosomal Locations for CCDS 37794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 41881226 41881285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41912370 41912475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41932601 41932761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41935168 41935241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41937634 41937691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41951101 41951175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGGGGGTCACCGTGGACGTGCACCAGGTGTTCCAGTACCCCTTCGAGCAGGTGGTCGCTTGCTTCCTCC
GAAAGTATCCCAATCCAATGGATAAAAATGTCATCTCTGTAAAAACTGTGGAAGAAAAGAAAGATGAATC
AACAGGACTCATCTATAGAAAGAGGATTGCTATCTGTCAGAATGTGGTTCCAGAGATTTTAAGAAAGGTG
AGTATTTTAAAGGTACCTGATATCCAGCTAGAAGAAGAGTCATGGCTCAGTCTTCAGAAAAGGAACATGG
CTATCCGGAGTCACTGCCTCACGTGGACACAGTATGCATCCATGAGGGAAGAGTCTGTCTTCCGGGAAAG
CGTAGAAAATCCAAATTGGACAGAGTTCATTCAAACAGGCCGAATTTCAATCACGGGGGCTGGGTTTCTC
AACTGTATTTTGGAAACTTTTGCTAGTACGTTCTTAAGACAAGGAGCCCAGAAGGGAATTAGAATAATGG
AGATGCTGCTAAAGGAACAGTGTGGCTCCCCCTTAGTGGAATAA

Translation (177 aa):
MGVTVDVHQVFQYPFEQVVACFLRKYPNPMDKNVISVKTVEEKKDESTGLIYRKRIAICQNVVPEILRKV
SILKVPDIQLEEESWLSLQKRNMAIRSHCLTWTQYASMREESVFRESVENPNWTEFIQTGRISITGAGFL
NCILETFASTFLRQGAQKGIRIMEMLLKEQCGSPLVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH