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Report for CCDS15776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15776.1 Public Mus musculus 2 Lcn12 23 108 98 CCDS HistoryNCBI Gene:77701Re-query CCDS DB by CCDS ID:15776.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028312.12 ENSMUSP00000028312.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028312.12Link to Ensembl Protein Viewer:ENSMUSP00000028312.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028312Re-query CCDS DB by Protein ID:ENSMUSP00000028312
Original member Current member NCBI NM_029958.1 NP_084234.1 Accepted alive Link to Nucleotide Sequence:NM_029958.1Link to Protein Sequence:NP_084234.1Re-query CCDS DB by Nucleotide ID:NM_029958Re-query CCDS DB by Protein ID:NP_084234Link to BLAST:NP_084234.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084234.1 193 Q6JVL5 193 100% 0 0

Chromosomal Locations for CCDS 15776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25490924 25490952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25492008 25492109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25492241 25492363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25492431 25492507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25493222 25493358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25493743 25493856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGGCCCTTGGTGGGCTCTGTGGCTGATACTCACCCTGCCCCAAATCCTGGAGAGTCAGATCTCAGCCA
TGTCTCAAGGCTTTCCCCAGATGACAAGCTTCCAAAGTGACCAGTTTCAGGGAGAGTGGTTTGTCCTCGG
TCTGGCAGACAACACCTTCAGGAGAGAGCACCGGGCCTTGCTGAATTTCTTCACTACATTGTTTGAGCTG
AAAGAGAAAAGTCAGTTTCAGGTGACCAACTCCATGACTCGGGGCAAGCACTGCAACACTTGGTCCTATA
CCCTGATCCCAGCAACCAAGCCTGGGCAATTCACCAGGGACAACAGAGGGTCAGGGCCTGGGGCAGACAG
AGAGAATATACAGGTCATAGAGACAGACTACATCACGTTTGCCCTGGTGCTGTCCCTCAGACAGACAAGC
AGCCAGAACATCACAAGGGTCAGCCTTCTGGGTAGAAACTGGAGACTTTCTCATAAGACAATAGACAAGT
TCATCTGCCTGACCAGGACCCAAAACCTCACAAAGGATAACTTCCTCTTTCCTGATTTGAGTGACTGGTT
ACCGGATCCACAAGTCTGCTGA

Translation (193 aa):
MGPWWALWLILTLPQILESQISAMSQGFPQMTSFQSDQFQGEWFVLGLADNTFRREHRALLNFFTTLFEL
KEKSQFQVTNSMTRGKHCNTWSYTLIPATKPGQFTRDNRGSGPGADRENIQVIETDYITFALVLSLRQTS
SQNITRVSLLGRNWRLSHKTIDKFICLTRTQNLTKDNFLFPDLSDWLPDPQVC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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