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Report for CCDS28328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28328.1 Public Mus musculus 16 Tmem50b 23 108 98 CCDS HistoryNCBI Gene:77975Re-query CCDS DB by CCDS ID:28328.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023686.14 ENSMUSP00000023686.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023686.14Link to Ensembl Protein Viewer:ENSMUSP00000023686.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023686Re-query CCDS DB by Protein ID:ENSMUSP00000023686
Original member NCBI NM_030018.3 NP_084294.1 Updated not alive Link to Nucleotide Sequence:NM_030018.3Link to Protein Sequence:NP_084294.1Re-query CCDS DB by Nucleotide ID:NM_030018Re-query CCDS DB by Protein ID:NP_084294
Current member NCBI NM_030018.4 NP_084294.1 Accepted alive Link to Nucleotide Sequence:NM_030018.4Link to Protein Sequence:NP_084294.1Re-query CCDS DB by Nucleotide ID:NM_030018Re-query CCDS DB by Protein ID:NP_084294Link to BLAST:NP_084294.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084294.1 158 Q9D1X9 158 100% 0 0

Chromosomal Locations for CCDS 28328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 91576113 91576158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91577974 91578031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91580202 91580294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91581695 91581762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91583276 91583388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91586942 91587040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGCAGGCTTCCTGGATAACTTCCGCTGGCCGGAGTGTGAGTGTATTGACTGGAGCGAGCGCAGGAACA
CGGTGGCCTCTGTGGTCGCAGGGATATTGTTTTTTACAGGCTGGTGGATAATGATTGACGCGGCAGTGGT
GTACCCTAAGCCTGAGCAGCTGAACCACGCTTTCCACACGTGCGGTGTGTTTTCCACGCTGGCCTTCTTC
ATGATAAATGCTGTATCCAATGCCCAGGTGCGAGGTGACAGCTATGAAAGCGGCTGCTTAGGACGAACTG
GTGCTCGGGTCTGGCTCTTCATTGGGTTCATGCTGATGTTCGGGTCACTCATCGCCTCCATGTGGATCCT
TTTTGGTGCATATGTTACTCAAAATATTGATGTTTACCCTGGACTAGCTGTGTTCTTTCAAAATGCTCTT
ATATTTTTTAGCACTCTGATCTACAAATTTGGAAGAACTGAAGAGCTCTGGGCCTGA

Translation (158 aa):
MAGFLDNFRWPECECIDWSERRNTVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFF
MINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNIDVYPGLAVFFQNAL
IFFSTLIYKFGRTEELWA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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