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Report for CCDS26656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26656.1 Reviewed, update pending Mus musculus 13 Mctp1 23 108 98 CCDS HistoryNCBI Gene:78771Re-query CCDS DB by CCDS ID:26656.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 26656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109583.8 ENSMUSP00000105212.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109583.8Link to Ensembl Protein Viewer:ENSMUSP00000105212.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109583Re-query CCDS DB by Protein ID:ENSMUSP00000105212
Original member NCBI NM_030174.2 NP_084450.2 Updated not alive Link to Nucleotide Sequence:NM_030174.2Link to Protein Sequence:NP_084450.2Re-query CCDS DB by Nucleotide ID:NM_030174Re-query CCDS DB by Protein ID:NP_084450
Current member NCBI NM_030174.3 NP_084450.3 Pending alive Link to Nucleotide Sequence:NM_030174.3Link to Protein Sequence:NP_084450.3Re-query CCDS DB by Nucleotide ID:NM_030174Re-query CCDS DB by Protein ID:NP_084450Link to BLAST:NP_084450.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084450.3 951 E9PV86 951 100% 0 0

Chromosomal Locations for CCDS 26656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 76641766 76641826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76688488 76688630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76712080 76712159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76723668 76723779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76731771 76731809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76756986 76757156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76759690 76759820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76801359 76801545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76806169 76806262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76822973 76823075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76824772 76824874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76825206 76825307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76825723 76825797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76827682 76827801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76891495 76891614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76925472 76925525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77020752 77020861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77024783 77024892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77028622 77028719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77029880 77029951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGTACCAGTTGGATATCACACTAAGAAGGGGTCAAAGTTTAGCTGCCCGTGATCGAGGAGGGACAAGCG
ATCCGTATGTGAAGTTTAAAATTGGAAGAAAAGAAGTTTTTAGAAGCAAAATTATCCACAAGAACCTAAA
TCCTGTGTGGGAGGAAAAGGCTTGCGTGCTCATTGACCATCTTAGAGAGCCACTATATATCAAGGTATTT
GACTATGATTTTGGACTGCAAGATGACTTTATGGGCTCAGCCTTTCTTGATCTCACTCAGTTGGAGTTAA
ACAGGTCCACAGATGTTACCCTAACTCTGAAAGACCCCCATTATCCTGACCATGACCTTGGAATCATTTT
GCTGTCAGTCATCCTTACGCCTAAGGAAGGTGAACACAGGGATGTGACAATGCTAATGAGGAAGAGTTGG
AAAAGATCCAGTAAGTTTCAGACCCAAAGTTTACGCCTGTCCGACCAGCACAGGAAATCACACCTTTGGA
GAGGAATAGTCAGCATCACCTTGATTGAGGGTCGAGATCTCAAAGCAATGGATTCCAATGGGTTGAGTGA
TCCATATGTGAAGTTCCGGCTTGGCCATCAGAAGTACAAGAGCAAGATTATGCCCAAAACTTTGAACCCT
CAGTGGAGGGAGCAATTTGATTTCCATCTCTATGAAGAAAGAGGTGGGATCATGGACATCACTGCCTGGG
ACAAAGATGCTGGGAAAAGAGATGACTTTATTGGAAGGTGCCAGGTTGACCTGTCTTCCCTCAGTAGGGA
GCAAACTCACAAGCTGGAGTTACATCTGGAAGAGGGTGAGGGCCACCTGGTTCTGCTTGTCACTCTGACA
GCCTCGGCCACAGTCTGTATCTCTGACCTCTCTGTCAATTCCATGGAGGACCAGAAGGAGCGGGAAGAGA
TATTAAAGAGATATAGCCCACTGAGGATATTTAACAACCTAAAAGACGTGGGATTTCTCCAGGTGAAAGT
CATCAGAGCAGAAGGTTTGATGGCTGCAGATGTCACAGGTAAAAGTGATCCATTTTGTGTAGTAGAACTG
AACAATGATAGGCTGCTAACACACACTGTGTACAAAAACCTCAATCCTGAGTGGAACAAAGTGTTCACAT
TTAACATTAAAGACATTCATTCAGTTCTTGAAGTGACAGTTTATGATGAAGATCGTGACCGGAGTGCCGA
CTTTCTGGGCAGAGTCGCTATACCATTGCTGTCTATTCAAAATGGTGAACAGAAAGCCTACGTCTTGAAA
AACAAGCAGCTGACAGGGCCAACAAAGGGGGTCATCTATCTTGAAATAGATGTGATTTTTAATGCTGTGA
AAGCCAGCTTACGAACATTAATACCCAAAGAACGGAAGTACATTGAAGAGGAAAACAGACTCTCTAAACA
GCTGCTTCTAAGAAACTTTATCAGAACAAAACGTTGTGTCATAGTGCTTGTAAACGCTGCATACTACGTT
AATAGTTGCTTTGATTGGGATTCGCCCCCAAGGAGTCTTGCTGCTTTTGTGCTCTTTCTCCTCATTGTCT
GGAACTTTGAGCTCTACATGATACCACTGCTGCTGTTGTTACTATTGACATGGAACTACTTCCTGATAAT
ATCCGGGAAAGACAACAGGCAACGGGACACAGTAGTGGAGGACATGCTGGAGGACGAAGAGGAAGAAGAT
GACAGAGATGACAAGGATGGTGAAAAGAAAGGATTTATAAATAAAATCTATGCGATCCAGGAAGTCTGTG
TCAGTGTGCAGAACATCCTAGATGAAGTGGCTTCCCTTGGTGAAAGGATAAAGAATACTTTCAACTGGAC
TGTCCCCTTCTTAAGCTGGCTGGCCATTGTAGCCCTGTGTGTGTTCACCGCCATTCTGTACTTCATCCCA
CTGAGATACATTGTTCTTGTTTGGGGAATTAATAAATTTACAAAAAAGCTTCGGAGTCCATATGCAATTG
ATAACAATGAACTACTTGACTTCCTTTCCAGAGTTCCTTCAGATGTACAAGTGGTGCAGTACCAAGAACT
GAAACCAGATCATTCTCATAGCCCATACAAAAGGAAGAAAAACAACCTTGGCTAG

Translation (694 aa):
MYQLDITLRRGQSLAARDRGGTSDPYVKFKIGRKEVFRSKIIHKNLNPVWEEKACVLIDHLREPLYIKVF
DYDFGLQDDFMGSAFLDLTQLELNRSTDVTLTLKDPHYPDHDLGIILLSVILTPKEGEHRDVTMLMRKSW
KRSSKFQTQSLRLSDQHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNP
QWREQFDFHLYEERGGIMDITAWDKDAGKRDDFIGRCQVDLSSLSREQTHKLELHLEEGEGHLVLLVTLT
ASATVCISDLSVNSMEDQKEREEILKRYSPLRIFNNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVEL
NNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYDEDRDRSADFLGRVAIPLLSIQNGEQKAYVLK
NKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKERKYIEEENRLSKQLLLRNFIRTKRCVIVLVNAAYYV
NSCFDWDSPPRSLAAFVLFLLIVWNFELYMIPLLLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEED
DRDDKDGEKKGFINKIYAIQEVCVSVQNILDEVASLGERIKNTFNWTVPFLSWLAIVALCVFTAILYFIP
LRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPDHSHSPYKRKKNNLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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