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Report for CCDS19230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19230.1 Public Mus musculus 5 Trmt44 23 108 98 CCDS HistoryNCBI Gene:78890Re-query CCDS DB by CCDS ID:19230.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030980.11 ENSMUSP00000030980.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030980.11Link to Ensembl Protein Viewer:ENSMUSP00000030980.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030980Re-query CCDS DB by Protein ID:ENSMUSP00000030980
Original member Current member NCBI NM_030208.3 NP_084484.2 Accepted alive Link to Nucleotide Sequence:NM_030208.3Link to Protein Sequence:NP_084484.2Re-query CCDS DB by Nucleotide ID:NM_030208Re-query CCDS DB by Protein ID:NP_084484Link to BLAST:NP_084484.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084484.2 713 Q9D2Q2 713 100% 0 0

Chromosomal Locations for CCDS 19230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35557826 35558055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35562492 35562608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35564023 35564455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35565361 35565544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35566422 35566528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35568761 35568832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35569871 35569978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35571044 35571112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35572703 35572922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35574080 35574194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35574559 35575045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGGAGGAGCTGGGTAGAGTGCGGCTAAGCGATCCTGATGCCCTGCTACCTGCAGGCTTCTGGGCCGCCG
TGACCGTGTGGCTGGAGAGGCCACAGGTGGCCAACAAGAGGCTGTGCGGCGCCCGCATGGAAGCCCGCGG
GAGAACTTTGCGGTCCCACGCCCAGGCGGAGTGTGGACCGCGGCAGGGACAGGGACACGGGCTGGAGAGG
GAACCCGGACAGGCTTCTCCTAAAGGAGAGCCAGAGTCGGGACCTAGGGCGAGCCGCGAAGGCACCGCTC
CCGCGGCTGACCTGAACTCGCTATGGGACCGAGTCTCCCAAAGCCTCGTCCACGCCAATCCGGAAATGCT
GGCCTTCCTCTGTGGCCCCTCGTTGGGTCCTCAGCCTGAAGCCGCGCAGGAGCTCGACCTGATTCTCAGG
ACTGTCATCCCGAAAGCGAGCCCGCACTCCCCACTCACAGAGCCGAAGAAAGAACTGGTAGTGCAAGATG
TCTCCAGTGGGAGTGTCACCTTTTTGCCCTTGGAAGAAGATAATGAGGGGAATTTGGAGGTTAAAACGAG
CAACGTGTATCAACTCCATCTCCATCACAACGAAGGAGAATGGTTCATATCTGTTTTAATTTTCTGTCCA
GAGAGATGGCATTCAGATGGTGTTGTCTATCCTAAGCCTGCCTGGCTCGGAGAAGAACTGCTGTCCAAGC
TGGCCAGGTGGGCGGTGGAGAACAGGAAGAGCGAGTTTAAAAGCACACTTTCCCTGGTGTCTATCCTGCG
CTATAGCAGGATGTACCAGGAGCTCAAAGAGAAATACAGAGACATGGTAAAGGTTTGGCCTGAAGTAACA
GATCCTGAAAAGTTTGTCTATGAAGATGTGGCCATTGCTACGTATCTGCTGATCCTATGGGAAGAGGAAA
GGGCTGAGAAGGGAGTCACCACCAAGCAGTCTTTCGTGGACTTGGGGTGTGGAAATGGCCTTCTGGTCCA
CATCTTGAGCAACGAGGGGCACCCAGGTAGAGGGATTGATATCCGAAGAAGAAAAATCTGGGACATGTAT
GGACCCCAAACTCAGCTGGAGGAAGGCTCCATCACTCCGAGTGACGAGACCCTGTTCCCTGGTGTTGATT
GGCTGATTGGTAACCATTCTGATGAGCTCACCCCCTGGATCCCTGTCATTGCAGCCAGGTCTTCCTACAC
CTGTCGTTTCTTTGTCCTGCCCTGCTGTTTTTTCGACTTTGTGGGGCGATACCAGCGGCAGCAGAGCAGG
AAGACACAGTACCGAGAGTATCTGGACTTTGTGCTGGAGGTGGGGCTCTCCTGTGGCTTCCACGTGCAGG
AGGACTGCCTCAGGATTCCTTCTACTAAGCGGGTCTGCCTCATTGGGAAATCCAGAACATACCCGCCTTC
TGCAGAGGTCTGGATGGATGAGCAGAGAACGCGATACCTGCACAGCAGACAGGGCCATCCACAGAGCCGG
CCTGGAGGGGCACATGCACCTTCTGCACCGCAGACTGCTGCTCATGACGCTGGTCTCCAGGACAGTTGCA
GGACCGTCAATGCTGGGTCTGAGTGCGTGCTGGAGGGCCTGGCTGCTGAGCGAGGAGCTGGAGCCCCAGC
CCCAGGACTCTGGGTGCCTGGGTTCTGCCCTAGAGAAAAGGCCGAGCGTGTGAGGAATTGTGCAGCCCTC
CCTCGAGACTTCGTTGACCAAGTGGTTTTGCAGGTGGCAAACTTGTTGTTAGATAGAAAGAAGTTCAACA
CAGGAAACTCTGAAGCCAGGAGTCTGAAGCCCTGGAATGGAGGAGGGAGCCTTTCCTTGGCAGAAGTGGC
TGCAGAACTAAACTCAGAGACGCTGCAGCGGCTGAAGCGGGAGTGTGGAGGCCTACAGACCCTTCTCAAG
AATAGCCATCAAGTGTTTGAAGTTCTGAATGGGCGCGTTCACATCCGTGACTGGCGGCAGGAGCTGCAGA
GGGGAAAGCCTCCAGAAGCCAAGCAGAACCTGTCTGCAGCAGTGTTCAAGACTCGGATCTGCTGGTTCTT
CGCCCACCATCCTGATGGCTGCGTACTGCCTGCTGCCCAATGCCCCTTTGCCCATGGGCCCGAAGAGCTG
CGCCTGTCACAGACCTTGAAGAAGCAGAGGCAGGCTCCCTGA

Translation (713 aa):
MEELGRVRLSDPDALLPAGFWAAVTVWLERPQVANKRLCGARMEARGRTLRSHAQAECGPRQGQGHGLER
EPGQASPKGEPESGPRASREGTAPAADLNSLWDRVSQSLVHANPEMLAFLCGPSLGPQPEAAQELDLILR
TVIPKASPHSPLTEPKKELVVQDVSSGSVTFLPLEEDNEGNLEVKTSNVYQLHLHHNEGEWFISVLIFCP
ERWHSDGVVYPKPAWLGEELLSKLARWAVENRKSEFKSTLSLVSILRYSRMYQELKEKYRDMVKVWPEVT
DPEKFVYEDVAIATYLLILWEEERAEKGVTTKQSFVDLGCGNGLLVHILSNEGHPGRGIDIRRRKIWDMY
GPQTQLEEGSITPSDETLFPGVDWLIGNHSDELTPWIPVIAARSSYTCRFFVLPCCFFDFVGRYQRQQSR
KTQYREYLDFVLEVGLSCGFHVQEDCLRIPSTKRVCLIGKSRTYPPSAEVWMDEQRTRYLHSRQGHPQSR
PGGAHAPSAPQTAAHDAGLQDSCRTVNAGSECVLEGLAAERGAGAPAPGLWVPGFCPREKAERVRNCAAL
PRDFVDQVVLQVANLLLDRKKFNTGNSEARSLKPWNGGGSLSLAEVAAELNSETLQRLKRECGGLQTLLK
NSHQVFEVLNGRVHIRDWRQELQRGKPPEAKQNLSAAVFKTRICWFFAHHPDGCVLPAAQCPFAHGPEEL
RLSQTLKKQRQAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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