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Report for CCDS61320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61320.1 Under review, withdrawal Homo sapiens 13 SMIM2 24 110 108 CCDS HistoryNCBI Gene:79024Re-query CCDS DB by CCDS ID:61320.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61320.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400419.2 ENSP00000383270.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400419.2Link to Ensembl Protein Viewer:ENSP00000383270.1Re-query CCDS DB by Nucleotide ID:ENST00000400419Re-query CCDS DB by Protein ID:ENSP00000383270
Original member NCBI NM_024058.3 NP_076963.1 MANE Select Removed not alive Link to Nucleotide Sequence:NM_024058.3Link to Protein Sequence:NP_076963.1Re-query CCDS DB by Nucleotide ID:NM_024058Re-query CCDS DB by Protein ID:NP_076963Link to BLAST:NP_076963.1

Chromosomal Locations for CCDS 61320.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 44143918 44143922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44160603 44160855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (258 nt):
ATGGAAGCTGGGGAGAGGATTGATGCCAGCCAGCTGCCTCACAGGGTGCTGGAAACACGTGGCCATGCCA
TTAGCATCCTGTTCGGCTTCTGGACGAGTTTCATCTGTGACACCTACATAGTCCTCGCTTGGATCAGCAA
GATAAAAGGCAGCCCTGATGTTAGTGCCTCCTCTGATGAGCCATACGCCAGAATCCAGCAGAGCAGAAGG
CAATGCCACGCAGAAGAGGACCAAAGTCAGGTGCCAGAAGCAGGCTGA

Translation (85 aa):
MEAGERIDASQLPHRVLETRGHAISILFGFWTSFICDTYIVLAWISKIKGSPDVSASSDEPYARIQQSRR
QCHAEEDQSQVPEAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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