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Report for CCDS1566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1566.1 Public Homo sapiens 1 C1orf35 24 110 108 CCDS HistoryNCBI Gene:79169Re-query CCDS DB by CCDS ID:1566.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1566.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272139.5 ENSP00000272139.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272139.5Link to Ensembl Protein Viewer:ENSP00000272139.4Re-query CCDS DB by Nucleotide ID:ENST00000272139Re-query CCDS DB by Protein ID:ENSP00000272139
Original member Current member NCBI NM_024319.4 NP_077295.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024319.4Link to Protein Sequence:NP_077295.1Re-query CCDS DB by Nucleotide ID:NM_024319Re-query CCDS DB by Protein ID:NP_077295Link to BLAST:NP_077295.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077295.1 263 Q9BU76-1 263 100% 0 0

Chromosomal Locations for CCDS 1566.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 228101131 228101254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228101339 228101473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228102080 228102165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228102310 228102382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228102478 228102560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228102643 228102688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228102899 228103049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228103134 228103227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGTTCGGCTCCAGTCGTGGAGGCGTGCGCGGCGGGCAGGACCAGTTCAACTGGGAGGACGTGAAGACTG
ACAAGCAGCGGGAGAACTACCTGGGCAACTCGCTGATGGCGCCGGTAGGCCGCTGGCAGAAGGGCCGCGA
CCTCACCTGGTACGCCAAGGGCCGGGCGCCATGCGCGGGCCCGAGCCGCGAGGAGGAACTGGCAGCCGTG
CGGGAGGCGGAGCGCGAGGCGCTGCTGGCCGCCCTTGGCTACAAGAACGTGAAGAAGCAGCCCACGGGCC
TGAGCAAGGAGGACTTCGCGGAGGTCTGCAAGCGGGAAGGAGGCGACCCCGAGGAGAAGGGCGTGGACCG
GCTGCTGGGGCTGGGGAGCGCAAGTGGCTCCGTGGGCCGCGTGGCGATGTCCCGAGAGGACAAGGAGGCC
GCCAAACTGGGGCTGTCTGTGTTCACGCATCACCGCGTAGAGAGCGGCGGGCCCGGGACCTCGGCAGCCT
CGGCCAGGAGGAAGCCGCGGGCGGAGGATCAGACGGAAAGCAGTTGTGAGAGCCACAGGAAAAGCAAGAA
GGAGAAGAAGAAAAAGAAAAAGAGGAAACACAAGAAAGAGAAGAAGAAGAAAGACAAAGAGCACAGGCGG
CCAGCTGAGGCCACCTCCTCTCCCACATCTCCTGAGAGGCCCAGGCACCACCACCATGACTCCGACTCCA
ACTCCCCCTGCTGTAAGAGGAGGAAGCGGGGACACAGTGGGGACAGGAGGAGCCCGTCTCGCAGGTGGCA
TGACAGAGGCTCTGAGGCCTGA

Translation (263 aa):
MFGSSRGGVRGGQDQFNWEDVKTDKQRENYLGNSLMAPVGRWQKGRDLTWYAKGRAPCAGPSREEELAAV
REAEREALLAALGYKNVKKQPTGLSKEDFAEVCKREGGDPEEKGVDRLLGLGSASGSVGRVAMSREDKEA
AKLGLSVFTHHRVESGGPGTSAASARRKPRAEDQTESSCESHRKSKKEKKKKKKRKHKKEKKKKDKEHRR
PAEATSSPTSPERPRHHHHDSDSNSPCCKRRKRGHSGDRRSPSRRWHDRGSEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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