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Report for CCDS740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
740.1 Public Homo sapiens 1 RPAP2 24 110 108 CCDS HistoryNCBI Gene:79871Re-query CCDS DB by CCDS ID:740.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 740.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000610020.2 ENSP00000476948.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000610020.2Link to Ensembl Protein Viewer:ENSP00000476948.1Re-query CCDS DB by Nucleotide ID:ENST00000610020Re-query CCDS DB by Protein ID:ENSP00000476948
Original member Current member NCBI NM_024813.3 NP_079089.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024813.3Link to Protein Sequence:NP_079089.2Re-query CCDS DB by Nucleotide ID:NM_024813Re-query CCDS DB by Protein ID:NP_079089Link to BLAST:NP_079089.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079089.2 612 Q8IXW5-1 612 100% 0 0

Chromosomal Locations for CCDS 740.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 92299074 92299146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92300194 92300239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92301476 92301590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92303977 92304075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92304284 92304349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92307188 92307276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92320599 92320634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92323445 92324375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92333391 92333473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92336347 92336427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92345846 92345914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92380724 92380873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92387011 92387011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGGCGGACTTCGCTGGGCCGTCTTCTGCCGGCCGCAAGGCCGGGGCTCCCCGCTGCTCTCGAAAAGCCG
CAGGTACTAAACAGACAAGTACTTTGAAACAAGAAGATGCTTCTAAAAGGAAAGCTGAACTAGAAGCAGC
TGTGAGAAAGAAGATTGAATTTGAGAGAAAAGCTCTACATATTGTTGAACAGCTTTTAGAGGAGAATATT
ACAGAAGAGTTCCTAATGGAGTGTGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCGTGGATGAAC
GTTCTATTGTCAAACTCTGTGGTTATCCTTTATGTCAGAAGAAGCTGGGAATTGTACCAAAACAGAAATA
TAAAATTTCTACCAAAACCAATAAAGTCTATGATATTACTGAAAGAAAGTCTTTTTGCAGCAATTTTTGT
TATCAAGCATCTAAGTTTTTTGAAGCACAAATTCCCAAAACTCCAGTATGGGTTCGAGAAGAAGAGAGGC
ATCCTGATTTTCAACTGCTAAAGGAAGAACAAAGTGGCCATTCTGGAGAAGAAGTACAGTTATGCAGTAA
AGCCATTAAAACATCAGATATCGACAATCCTAGCCACTTTGAAAAGCAATATGAATCTAGTTCTTCTAGC
ACTCACAGTGATAGTAGCAGTGACAATGAGCAAGACTTTGTTTCCTCCATTCTACCAGGAAACAGACCAA
ATTCAACAAATATTAGACCACAGCTGCACCAAAAAAGCATAATGAAAAAGAAAGCTGGTCACAAAGCTAA
CTCCAAACACAAAGACAAAGAACAGACAGTAGTAGATGTCACTGAGCAGTTAGGCGATTGCAAATTAGAT
AGTCAGGAGAAAGATGCTACATGTGAACTTCCTTTACAGAAAGTAAATACTCAGAGTTCTTCAAATAGCA
CTTTGCCTGAAAGATTAAAAGCGTCAGAAAATTCTGAAAGTGAATACAGTAGGTCAGAAATAACTCTAGT
AGGCATAAGTAAGAAAAGTGCAGAGCATTTTAAGAGAAAATTTGCCAAATCAAACCAAGTGTCTAGGTCA
GTGTCTAGTTCAGTGCAGGTGTGTCCTGAAGTTGGAAAGAGAAACTTACTTAAAGTTTTGAAGGAGACTT
TGATTGAGTGGAAGACAGAAGAAACATTGAGGTTTTTGTATGGCCAGAATTATGCTTCTGTGTGTCTGAA
ACCCGAAGCCTCTCTGGTTAAAGAAGAACTTGATGAAGATGACATAATCTCAGATCCAGATAGTCATTTC
CCTGCCTGGAGGGAATCTCAGAACAGCTTGGATGAGTCTTTACCTTTTAGGGGCTCAGGTACAGCCATTA
AACCACTGCCAAGTTACGAGAATTTGAAAAAAGAAACTGAAAAGTTAAATCTGAGGATCAGGGAGTTTTA
CAGAGGACGGTATGTTTTGGGTGAAGAAACCACCAAATCACAAGACTCAGAAGAGCATGATTCCACCTTT
CCACTGATAGACTCAAGTTCCCAGAACCAGATTAGAAAACGCATCGTACTTGAAAAGTTGAGTAAAGTGT
TGCCTGGGCTTCTGGTTCCTCTTCAGATTACATTGGGAGATATTTACACACAACTTAAAAATCTTGTTCG
AACTTTCAGGTTAACAAATAGAAATATTATACACAAACCTGCGGAATGGACTTTAATTGCTATGGTGTTG
CTGTCATTACTGACCCCAATTCTTGGCATTCAGAAACATTCTCAGGAAGGTATGGTGTTTACACGGTTTC
TAGACACCCTCCTTGAAGAATTACATCTAAAAAATGAAGACCTTGAAAGTCTAACCATCATATTTAGAAC
CAGCTGTTTACCAGAGTGA

Translation (612 aa):
MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALHIVEQLLEENI
TEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKISTKTNKVYDITERKSFCSNFC
YQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGEEVQLCSKAIKTSDIDNPSHFEKQYESSSSS
THSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLD
SQEKDATCELPLQKVNTQSSSNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRS
VSSSVQVCPEVGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKSQDSEEHDSTF
PLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFRLTNRNIIHKPAEWTLIAMVL
LSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLESLTIIFRTSCLPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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