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Report for CCDS19676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19676.1 Public Mus musculus 5 Rilpl2 23 108 98 CCDS HistoryNCBI Gene:80291Re-query CCDS DB by CCDS ID:19676.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031347.7 ENSMUSP00000031347.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031347.7Link to Ensembl Protein Viewer:ENSMUSP00000031347.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031347Re-query CCDS DB by Protein ID:ENSMUSP00000031347
Original member Current member NCBI NM_030259.1 NP_084535.1 Accepted alive Link to Nucleotide Sequence:NM_030259.1Link to Protein Sequence:NP_084535.1Re-query CCDS DB by Nucleotide ID:NM_030259Re-query CCDS DB by Protein ID:NP_084535Link to BLAST:NP_084535.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084535.1 197 Q99LE1-1 197 100% 0 0

Chromosomal Locations for CCDS 19676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124463781 124463811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124468587 124468691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124469698 124469849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124477780 124478085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGAGGATCACCCCGTGCGGGAGGAGGAGGACGGCGAGGAAGACGAGGGCGCCCTGGCCAAGAGCCCCC
TGCAGCTGACCACCGACGACGTGTACGACATCTCCTATGTAGTGGGCCGCGAGCTGATGGCCCTGGGCAG
CGACCCCCGCGTCACCCGGCTGCAGTTCAAGATAGTACGTGTGATGGAGATGCTGGAGACGCTGGTAAAC
GAGGGCAGCCTGGCGGTCGAGGAACTGAGGATGGAGAGAGACAACCTCAAGCAAGAGGTGGAGGGGCTGC
GGAAAGCCGGTGTGTCCGGAGCCCAGGTAAACTTGGGACCGGACAAGATGGTAGTGGATCTGACAGACCC
CAACCGTCCCCGCTTCACTCTGCAAGAGCTGAGGGAGGTGCTGCAGGAGCGAAACAAGCTCAAGTCGCAG
CTGCTGCTGGTGCAGGAGGAACTGCAGTGCTACAGGAGTGGTCTACTTCCACCCAGAGAAACTCCAGGAG
GAAGAAGAGAGAAGGATGCTGTGGTTGCCATGGGCAACGGCGAGAAGGAGGAGAGGACCATTATGAAGAA
GCTGTTCTCTTTCCGGTCAGGGAAGCATACCTAG

Translation (197 aa):
MEDHPVREEEDGEEDEGALAKSPLQLTTDDVYDISYVVGRELMALGSDPRVTRLQFKIVRVMEMLETLVN
EGSLAVEELRMERDNLKQEVEGLRKAGVSGAQVNLGPDKMVVDLTDPNRPRFTLQELREVLQERNKLKSQ
LLLVQEELQCYRSGLLPPRETPGGRREKDAVVAMGNGEKEERTIMKKLFSFRSGKHT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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