NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11641.1 Public Homo sapiens 17 LIMD2 24 110 108 CCDS HistoryNCBI Gene:80774Re-query CCDS DB by CCDS ID:11641.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11641.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259006.8 ENSP00000259006.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259006.8Link to Ensembl Protein Viewer:ENSP00000259006.3Re-query CCDS DB by Nucleotide ID:ENST00000259006Re-query CCDS DB by Protein ID:ENSP00000259006
Original member Current member EBI ENST00000578402.5 ENSP00000462707.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000578402.5Link to Ensembl Protein Viewer:ENSP00000462707.1Re-query CCDS DB by Nucleotide ID:ENST00000578402Re-query CCDS DB by Protein ID:ENSP00000462707
Original member Current member EBI ENST00000578061.5 ENSP00000464003.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000578061.5Link to Ensembl Protein Viewer:ENSP00000464003.1Re-query CCDS DB by Nucleotide ID:ENST00000578061Re-query CCDS DB by Protein ID:ENSP00000464003
Original member Current member NCBI NM_030576.4 NP_085053.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030576.4Link to Protein Sequence:NP_085053.1Re-query CCDS DB by Nucleotide ID:NM_030576Re-query CCDS DB by Protein ID:NP_085053Link to BLAST:NP_085053.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085053.1 127 Q9BT23 127 100% 0 0

Chromosomal Locations for CCDS 11641.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 63698552 63698711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63698799 63698938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63699028 63699069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63699257 63699298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGTTCCAGGCTGCAGGAGCCGCCCAGGCCACCCCCTCTCATGACGCCAAAGGCGGCGGCAGCAGCACGG
TGCAGCGCTCCAAGTCCTTCAGCCTGCGGGCCCAGGTGAAGGAGACCTGCGCCGCCTGCCAGAAGACCGT
GTACCCCATGGAGCGGCTGGTGGCCGACAAGCTCATTTTCCACAACTCTTGCTTCTGCTGCAAGCACTGT
CACACCAAGCTCAGCCTGGGCAGCTACGCCGCGCTGCACGGGGAGTTCTACTGCAAACCCCACTTCCAGC
AGCTGTTTAAGAGCAAAGGCAACTACGACGAGGGGTTTGGCCGCAAGCAGCACAAGGAGCTCTGGGCCCA
CAAGGAGGTGGACCCCGGCACCAAGACGGCCTGA

Translation (127 aa):
MFQAAGAAQATPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHC
HTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH