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Report for CCDS40674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40674.1 Public Mus musculus 9 Lactb 23 108 98 CCDS HistoryNCBI Gene:80907Re-query CCDS DB by CCDS ID:40674.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034929.6 ENSMUSP00000034929.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034929.6Link to Ensembl Protein Viewer:ENSMUSP00000034929.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034929Re-query CCDS DB by Protein ID:ENSMUSP00000034929
Original member NCBI NM_030717.1 NP_109642.1 Updated not alive Link to Nucleotide Sequence:NM_030717.1Link to Protein Sequence:NP_109642.1Re-query CCDS DB by Nucleotide ID:NM_030717Re-query CCDS DB by Protein ID:NP_109642
Current member NCBI NM_030717.2 NP_109642.1 Accepted alive Link to Nucleotide Sequence:NM_030717.2Link to Protein Sequence:NP_109642.1Re-query CCDS DB by Nucleotide ID:NM_030717Re-query CCDS DB by Protein ID:NP_109642Link to BLAST:NP_109642.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109642.1 551 Q9EP89 551 100% 0 0

Chromosomal Locations for CCDS 40674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 66955675 66956200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66967679 66967844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66970582 66970936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66971176 66971366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66974718 66974784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66975041 66975391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGTACCGGCTCCTGTCAAGCGTGACAGCTCGGGCTGCGGCCACCGCAGGCCCAGCCTGGGACGGAGGGC
GGCGCGGGGCGCACAGGCGACCGGGCCTGCCTGTGCTGGGCCTTGGTTGGGCCGGCGGCCTGGGGCTCGG
GCTGGGGCTGGCTCTCGGCGCGAAGCTGGTGGTCGGGCTGCGGGGCGCCGTCCCCATTCAGTCCCCCGCG
GACCCCGAGGCGTCCGGCACTACCGAGTTATCGCACGAGCAGGCCCTGAGCCCGGGGAGCCCGCACACGC
CTGCGCCGCCAGCAGCCAGGGGCTTCTCCAGAGCCATCGAGAGCAGCCGCGATCTGCTACACCGGATCAA
GGATGAGGTTGGTGCCCCCGGCATCGTGGTTGGAGTTTCTGTAGATGGAAAAGAAGTCTGGTCAGAAGGT
TTAGGCTATGCAGACGTGGAGAACCGCGTACCCTGTAAGCCAGAAACGGTCATGAGAATCGCAAGCATCA
GCAAAAGCCTCACCATGGTGGCTCTGGCTAAACTGTGGGAAGCAGGGAAGCTGGATCTGGACCTTCCTGT
GCAGCACTATGTTCCCGAGTTCCCAGAAAAAGAATACGAGGGTGAAAAGGTTTCTGTCACAACAAGATTA
CTAATTTCGCATTTAAGTGGAATTCGTCATTATGAAAAGGACATAAAGAAAGTGAAAGAAGAGAAAGCTT
ATAAAGCCCTGAAGATGGTGAAAGGGACCCCGCCACCATCTGACCAAGAAAAAGAACTGAAAGAAAAGGG
AGGCAAAAACAACGAAAAGAGCGACGCACCGAAAGCCAAAGTCGAGCAGGACAGCGAAGCCAGATGCCGC
AGCGCGAAGCCAGGCAAGAAAAAGAATGACTTCGAACAAGGCGAATTGTATTTGAAAGAAAAGTTTGAAA
ATTCAATTGAATCACTAAGATTATTTAAAAATGACCCTTTATTCTTTAAACCTGGTAGTCAGTTTTTGTA
TTCAACGTTTGGCTATACTCTGCTGGCAGCCATAGTAGAAAGAGCTTCAGGATATAAATATTTGGATTAT
ATGCAGAAAATTTTCCATGATTTGGACATGCTGACAACTGTCCAGGAGGAAAACGAGCCAGTGATTTACA
ACAGAGCAAGATTTTACGTGTACAATAAAAAGAAACGTCTTGTCAACACACCTTACGTGGATAACTCCTA
TAAATGGGCTGGTGGTGGATTTCTGTCCACAGTGGGTGACCTCCTGAAATTTGGAAACGCAATGCTGTAT
GGCTACCAAGTTGGGCAGTTTAAGAACTCAAATGAAAATCTCTTGCCTGGATATCTCAAGCCAGAAACAA
TGGTGATGATGTGGACCCCAGTCCCTAACACAGAGATGTCCTGGGATAAAGAGGGGAAATATGCAATGGC
GTGGGGTGTGGTAGAGAAGAAGCAAACGTACGGATCCTGCAGGAAGCAGCGGCACTACGCCTCACATACT
GGAGGTGCTGTGGGTGCCAGTAGTGTCCTGCTGGTCCTTCCTGAAGAACTGGACTCAGAGGCCGTAAATA
ACAAGGTTCCCCCACGAGGAATAATCGTCTCTATCATATGCAACATGCAGTCTGTGGGGCTCAATAGCAC
TGCTTTGAAGATCGCTCTGGAATTTGATAAAGACAGAGCTGACTAA

Translation (551 aa):
MYRLLSSVTARAAATAGPAWDGGRRGAHRRPGLPVLGLGWAGGLGLGLGLALGAKLVVGLRGAVPIQSPA
DPEASGTTELSHEQALSPGSPHTPAPPAARGFSRAIESSRDLLHRIKDEVGAPGIVVGVSVDGKEVWSEG
LGYADVENRVPCKPETVMRIASISKSLTMVALAKLWEAGKLDLDLPVQHYVPEFPEKEYEGEKVSVTTRL
LISHLSGIRHYEKDIKKVKEEKAYKALKMVKGTPPPSDQEKELKEKGGKNNEKSDAPKAKVEQDSEARCR
SAKPGKKKNDFEQGELYLKEKFENSIESLRLFKNDPLFFKPGSQFLYSTFGYTLLAAIVERASGYKYLDY
MQKIFHDLDMLTTVQEENEPVIYNRARFYVYNKKKRLVNTPYVDNSYKWAGGGFLSTVGDLLKFGNAMLY
GYQVGQFKNSNENLLPGYLKPETMVMMWTPVPNTEMSWDKEGKYAMAWGVVEKKQTYGSCRKQRHYASHT
GGAVGASSVLLVLPEELDSEAVNNKVPPRGIIVSIICNMQSVGLNSTALKIALEFDKDRAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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