NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31520.1 Public Homo sapiens 11 OR8J3 24 110 108 CCDS HistoryNCBI Gene:81168Re-query CCDS DB by CCDS ID:31520.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31520.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000642058.1 ENSP00000493166.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642058.1Link to Ensembl Protein Viewer:ENSP00000493166.1Re-query CCDS DB by Nucleotide ID:ENST00000642058Re-query CCDS DB by Protein ID:ENSP00000493166
Original member Current member EBI ENST00000641913.1 ENSP00000493417.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641913.1Link to Ensembl Protein Viewer:ENSP00000493417.1Re-query CCDS DB by Nucleotide ID:ENST00000641913Re-query CCDS DB by Protein ID:ENSP00000493417
Original member Current member NCBI NM_001004064.2 NP_001004064.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004064.2Link to Protein Sequence:NP_001004064.1Re-query CCDS DB by Nucleotide ID:NM_001004064Re-query CCDS DB by Protein ID:NP_001004064Link to BLAST:NP_001004064.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004064.1 315 Q8NGG0 315 100% 0 0

Chromosomal Locations for CCDS 31520.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 56136771 56137718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGCTCCTGAAAATTTCACCAGGGTCACTGAGTTTATTCTCACAGGTGTCTCTAGCTGTCCAGAGCTCC
AGATTCCCCTCTTCCTGGTCTTCCTAGTGCTCTATGTGCTGACCATGGCAGGGAACCTGGGCATCATCAC
CCTCACCAGTGTTGACTCTCGACTTCAAAACCCCATGTACTTTTTCCTGAGACATCTAGCTATCATCAAT
CTTGGCAACTCTACTGTCATTGCCCCTAAAATGCTGATGAACTTTTTAGTAAAGAAGAAAACTACCTCAT
TCTATGAATGTGCCACCCAACTGGGAGGGTTCTTGTTCTTTATTGTATCGGAGGTAATGATGCTGGCTGT
GATGGCCTATGACCGCTATGTGGCCATTTGTAACCCTCTGCTCTACATGGTGGTGGTGTCTCGGCGGCTC
TGCCTCCTGCTGGTGTCCCTCACATACCTCTATGGCTTTTCTACAGCTATTGTGGTTTCACCTTGTATAT
TCTCTGTGTCTTATTGCTCTTCTAATATAATCAATCATTTTTACTGTGATATTGCACCTCTGTTAGCATT
ATCTTGCTCTGATACTTACATACCAGAAACAATAGTCTTTATATCTGCAGCAACAAATTTGGTTTTTTCC
ATGATTACAGTTCTAGTATCTTATTTCAATATTGTTTTGTCCATTCTAAGGATACGTTCACCAGAAGGAA
GGAAAAAAGCCTTTTCCACCTGCGCTTCGCATATGATAGCAGTCACGGTTTTCTATGGGACAATGCTATT
TATGTATTTGCAGCCCCAAACCAACCACTCACTGGATACTGATAAGATGGCTTCTGTGTTTTACACATTG
GTGATTCCTATGCTGAATCCCTTGATCTACAGCCTGAGGAATAATGATGTAAATGTTGCCTTAAAGAAAT
TCATGGAAAATCCATGTTACTCCTTTAAATCAATGTAA

Translation (315 aa):
MAPENFTRVTEFILTGVSSCPELQIPLFLVFLVLYVLTMAGNLGIITLTSVDSRLQNPMYFFLRHLAIIN
LGNSTVIAPKMLMNFLVKKKTTSFYECATQLGGFLFFIVSEVMMLAVMAYDRYVAICNPLLYMVVVSRRL
CLLLVSLTYLYGFSTAIVVSPCIFSVSYCSSNIINHFYCDIAPLLALSCSDTYIPETIVFISAATNLVFS
MITVLVSYFNIVLSILRIRSPEGRKKAFSTCASHMIAVTVFYGTMLFMYLQPQTNHSLDTDKMASVFYTL
VIPMLNPLIYSLRNNDVNVALKKFMENPCYSFKSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH