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Report for CCDS78082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78082.1 Public Homo sapiens 5 CCNJL 24 110 108 CCDS HistoryNCBI Gene:79616Re-query CCDS DB by CCDS ID:78082.1Re-query CCDS DB by GeneID:79616See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78082.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257536.13 ENSP00000257536.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257536.13Link to Ensembl Protein Viewer:ENSP00000257536.7Re-query CCDS DB by Nucleotide ID:ENST00000257536Re-query CCDS DB by Protein ID:ENSP00000257536
Original member Current member EBI ENST00000644313.1 ENSP00000493837.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644313.1Link to Ensembl Protein Viewer:ENSP00000493837.1Re-query CCDS DB by Nucleotide ID:ENST00000644313Re-query CCDS DB by Protein ID:ENSP00000493837
Original member Current member NCBI NM_001308173.3 NP_001295102.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001308173.3Link to Protein Sequence:NP_001295102.1Re-query CCDS DB by Nucleotide ID:NM_001308173Re-query CCDS DB by Protein ID:NP_001295102Link to BLAST:NP_001295102.1

Chromosomal Locations for CCDS 78082.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 160253378 160253798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160255549 160255708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160259469 160259771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160280525 160280738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160311858 160311923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGATGGATGAGCCGTGGTGGGAAGGGCGCGTCGCCTCGGACGTCCACTGCACCCTGCGCGAGAAGGAAC
TGAAGCTGCCCACCTTCCGAGCCCACTCCCCACTCCTGAAGAGCCGCCGGTTCTTCGTGGACATCCTGAC
CCTGCTGAGCAGCCACTGCCAGCTCTGCCCTGCAGCCCGGCACCTGGCCGTCTACCTGCTGGACCACTTC
ATGGATCGCTACAACGTCACCACCTCCAAGCAGCTCTACACCGTGGCCGTCTCCTGCCTCCTGCTTGCAA
GTAAGTTCGAGGATCGGGAAGACCACGTCCCCAAGTTGGAGCAAATAAACAGCACGAGGATCCTGAGCAG
CCAGAACTTCACCCTCACCAAGAAGGAGCTGCTGAGCACAGAGCTGCTGCTCCTGGAGGCCTTCAGCTGG
AACCTCTGCCTGCCCACGCCTGCCCACTTCCTGGACTACTACCTCTTGGCCTCCGTCAGCCAGAAGGACC
ACCACTGCCACACCTGGCCCACCACCTGCCCCCGCAAGACCAAAGAGTGCCTCAAGGAGTATGCCCATTA
CTTCCTAGAGGTCACCCTGCAAGATCACATATTCTACAAATTCCAGCCTTCTGTGGTCGCTGCGGCCTGT
GTTGGGGCCTCCAGGATTTGCCTGCAGCTTTCTCCCTACTGGACCAGAGACCTGCAGAGGATCTCAAGCT
ATTCCCTGGAGCACCTCAGCACGTGTATTGAAATCCTGCTGGTAGTGTATGACAACGTCCTCAAGGATGC
CGTAGCCGTCAAGAGCCAGGCCTTGGCAATGGTGCCCGGCACACCCCCCACCCCCACTCAAGTGCTGTTC
CAGCCACCAGCCTACCCGGCCCTCGGCCAGCCAGCGACCACCCTGGCACAGTTCCAGACCCCCGTGCAGG
ACCTATGCTTGGCCTATCGGGACTCCTTGCAGGCCCACCGTTCAGGGAGCCTGCTCTCGGGGAGTACAGG
CTCATCCCTCCACACCCCGTACCAACCGCTGCAGCCCTTGGATATGTGTCCCGTGCCCGTCCCTGCATCC
CTTAGCATGCATATGGCCATTGCAGCTGAGCCCAGGCACTGCCTCGCCACCACCTATGGAAGCAGCTACT
TCAGTGGGAGCCACATGTTCCCCACCGGCTGCTTTGACAGATAG

Translation (387 aa):
MMDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSSHCQLCPAARHLAVYLLDHF
MDRYNVTTSKQLYTVAVSCLLLASKFEDREDHVPKLEQINSTRILSSQNFTLTKKELLSTELLLLEAFSW
NLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKECLKEYAHYFLEVTLQDHIFYKFQPSVVAAAC
VGASRICLQLSPYWTRDLQRISSYSLEHLSTCIEILLVVYDNVLKDAVAVKSQALAMVPGTPPTPTQVLF
QPPAYPALGQPATTLAQFQTPVQDLCLAYRDSLQAHRSGSLLSGSTGSSLHTPYQPLQPLDMCPVPVPAS
LSMHMAIAAEPRHCLATTYGSSYFSGSHMFPTGCFDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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