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Report for CCDS42872.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42872.2 Public Homo sapiens 20 FAM83D 24 110 108 CCDS HistoryNCBI Gene:81610Re-query CCDS DB by CCDS ID:42872.2See the combined annotation on chromosome 20 in Sequence Viewer

Public Note for CCDS 42872.2
The coding region has been updated to shorten the N-terminus based on the use of a downstream in-frame start codon, which is supported by ribosome profiling and conservation data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42872.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619850.2 ENSP00000481465.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619850.2Link to Ensembl Protein Viewer:ENSP00000481465.1Re-query CCDS DB by Nucleotide ID:ENST00000619850Re-query CCDS DB by Protein ID:ENSP00000481465
Original member Current member NCBI NM_030919.3 NP_112181.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030919.3Link to Protein Sequence:NP_112181.3Re-query CCDS DB by Nucleotide ID:NM_030919Re-query CCDS DB by Protein ID:NP_112181Link to BLAST:NP_112181.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112181.3 585 Q9H4H8-1 585 100% 0 0

Chromosomal Locations for CCDS 42872.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 38926443 38926925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38941959 38942126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38947876 38948000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38951539 38952520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGGCTCTGCTGTCCGAGGGCCTGGACGAGGTGCCCGCCGCCTGCCTGTCGCCGTGCGGGCCGCCCAACC
CGACCGAGCTGTTCAGCGAGTCACGGCGCCTGGCTCTGGAGGAGCTGGTGGCGGGCGGCCCCGAAGCCTT
CGCGGCCTTCCTGCGACGCGAGCGCCTGGCTCGTTTCCTGAACCCCGATGAGGTGCACGCCATTCTGCGC
GCGGCGGAGAGGCCGGGAGAGGAGGGCGCGGCGGCGGCGGCGGCGGCCGAGGACTCGTTCGGCTCCTCGC
ACGACTGCTCTTCGGGCACCTACTTCCCCGAGCAGTCGGACCTGGAGCCACCGCTGTTGGAGCTTGGCTG
GCCCGCCTTCTACCAGGGCGCCTACCGCGGCGCCACGCGTGTCGAGACGCACTTCCAGCCCCGCGGCGCT
GGCGAAGGTGGCCCCTACGGCTGCAAGGACGCTCTGCGCCAGCAGCTCCGCTCGGCGCGAGAGGTGATTG
CAGTGGTCATGGACGTGTTCACAGACATCGACATCTTCAGAGACCTGCAAGAAATATGCAGGAAACAGGG
AGTTGCTGTGTATATCCTTCTGGACCAGGCTCTCCTCTCTCAATTTCTGGATATGTGCATGGATCTGAAA
GTTCATCCTGAACAGGAAAAGTTAATGACAGTTCGGACTATCACAGGAAATATCTACTATGCAAGGTCAG
GAACTAAGATTATTGGGAAGGTTCACGAAAAGTTCACGTTGATTGATGGCATCCGCGTGGCAACAGGCTC
CTACAGTTTTACATGGACGGATGGCAAATTAAACAGCAGTAACTTGGTAATTCTGTCTGGCCAAGTGGTT
GAACACTTTGATCTGGAGTTCCGAATCCTGTATGCCCAGTCCAAGCCCATCAGCCCCAAACTCCTGTCTC
ACTTCCAGAGCAGCAACAAGTTTGATCACCTCACCAACCGAAAACCACAGTCCAAGGAGCTCACCCTGGG
CAACCTGCTGCGGATGCGGCTGGCTAGGCTGTCAAGTACTCCCAGGAAGGCGGACCTGGACCCAGAGATG
CCCGCAGAGGGCAAGGCAGAGCGCAAGCCCCATGACTGTGAGTCCTCTACTGTTAGTGAGGAAGACTACT
TCAGCAGCCACAGGGACGAGCTCCAGAGCAGAAAGGCCATTGACGCTGCCACTCAAACAGAGCCAGGAGA
GGAGATGCCAGGGCTGAGTGTGAGTGAGGTGGGAACACAAACCAGCATCACCACAGCATGTGCTGGTACC
CAGACTGCAGTCATCACCAGGATAGCAAGCTCTCAAACCACGATTTGGTCCAGATCGACCACTACTCAGA
CTGACATGGATGAGAACATTCTCTTTCCTCGAGGAACTCAATCTACAGAAGGGTCACCAGTCTCAAAAAT
GTCTGTATCGAGATCTTCCAGTTTGAAGTCTTCCTCCTCTGTGTCTTCCCAAGGCTCTGTGGCAAGCTCC
ACTGGTTCTCCCGCTTCCATCAGAACCACTGACTTCCACAATCCTGGCTATCCCAAGTACCTGGGCACCC
CCCACCTGGAACTGTACTTGAGTGACTCACTTAGAAACTTGAACAAAGAGCGGCAATTCCACTTCGCTGG
TATCAGGTCCCGGCTCAACCACATGCTGGCTATGCTGTCAAGGAGAACACTCTTTACTGAAAACCACCTT
GGCCTTCATTCTGGCAATTTCAGCAGAGTTAATTTGCTTGCTGTTAGAGATGTAGCACTTTATCCTTCCT
ATCAGTAA

Translation (585 aa):
MALLSEGLDEVPAACLSPCGPPNPTELFSESRRLALEELVAGGPEAFAAFLRRERLARFLNPDEVHAILR
AAERPGEEGAAAAAAAEDSFGSSHDCSSGTYFPEQSDLEPPLLELGWPAFYQGAYRGATRVETHFQPRGA
GEGGPYGCKDALRQQLRSAREVIAVVMDVFTDIDIFRDLQEICRKQGVAVYILLDQALLSQFLDMCMDLK
VHPEQEKLMTVRTITGNIYYARSGTKIIGKVHEKFTLIDGIRVATGSYSFTWTDGKLNSSNLVILSGQVV
EHFDLEFRILYAQSKPISPKLLSHFQSSNKFDHLTNRKPQSKELTLGNLLRMRLARLSSTPRKADLDPEM
PAEGKAERKPHDCESSTVSEEDYFSSHRDELQSRKAIDAATQTEPGEEMPGLSVSEVGTQTSITTACAGT
QTAVITRIASSQTTIWSRSTTTQTDMDENILFPRGTQSTEGSPVSKMSVSRSSSLKSSSSVSSQGSVASS
TGSPASIRTTDFHNPGYPKYLGTPHLELYLSDSLRNLNKERQFHFAGIRSRLNHMLAMLSRRTLFTENHL
GLHSGNFSRVNLLAVRDVALYPSYQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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