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Report for CCDS41502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41502.1 Public Homo sapiens 10 ZNF239 24 110 108 CCDS HistoryNCBI Gene:8187Re-query CCDS DB by CCDS ID:41502.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41502.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306006.10 ENSP00000307774.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000306006.10Link to Ensembl Protein Viewer:ENSP00000307774.6Re-query CCDS DB by Nucleotide ID:ENST00000306006Re-query CCDS DB by Protein ID:ENSP00000307774
Original member Current member EBI ENST00000374446.7 ENSP00000363569.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374446.7Link to Ensembl Protein Viewer:ENSP00000363569.1Re-query CCDS DB by Nucleotide ID:ENST00000374446Re-query CCDS DB by Protein ID:ENSP00000363569
Original member Current member EBI ENST00000426961.1 ENSP00000398202.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426961.1Link to Ensembl Protein Viewer:ENSP00000398202.1Re-query CCDS DB by Nucleotide ID:ENST00000426961Re-query CCDS DB by Protein ID:ENSP00000398202
Original member Current member EBI ENST00000535642.5 ENSP00000443907.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535642.5Link to Ensembl Protein Viewer:ENSP00000443907.1Re-query CCDS DB by Nucleotide ID:ENST00000535642Re-query CCDS DB by Protein ID:ENSP00000443907
Original member Current member NCBI NM_001099282.2 NP_001092752.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099282.2Link to Protein Sequence:NP_001092752.1Re-query CCDS DB by Nucleotide ID:NM_001099282Re-query CCDS DB by Protein ID:NP_001092752Link to BLAST:NP_001092752.1
Original member Current member NCBI NM_001099283.2 NP_001092753.1 Accepted alive Link to Nucleotide Sequence:NM_001099283.2Link to Protein Sequence:NP_001092753.1Re-query CCDS DB by Nucleotide ID:NM_001099283Re-query CCDS DB by Protein ID:NP_001092753Link to BLAST:NP_001092753.1
Original member Current member NCBI NM_001099284.2 NP_001092754.1 Accepted alive Link to Nucleotide Sequence:NM_001099284.2Link to Protein Sequence:NP_001092754.1Re-query CCDS DB by Nucleotide ID:NM_001099284Re-query CCDS DB by Protein ID:NP_001092754Link to BLAST:NP_001092754.1
Original member Current member NCBI NM_001324347.2 NP_001311276.1 Accepted alive Link to Nucleotide Sequence:NM_001324347.2Link to Protein Sequence:NP_001311276.1Re-query CCDS DB by Nucleotide ID:NM_001324347Re-query CCDS DB by Protein ID:NP_001311276Link to BLAST:NP_001311276.1
Original member Current member NCBI NM_001324348.2 NP_001311277.1 Accepted alive Link to Nucleotide Sequence:NM_001324348.2Link to Protein Sequence:NP_001311277.1Re-query CCDS DB by Nucleotide ID:NM_001324348Re-query CCDS DB by Protein ID:NP_001311277Link to BLAST:NP_001311277.1
Original member Current member NCBI NM_001324349.2 NP_001311278.1 Accepted alive Link to Nucleotide Sequence:NM_001324349.2Link to Protein Sequence:NP_001311278.1Re-query CCDS DB by Nucleotide ID:NM_001324349Re-query CCDS DB by Protein ID:NP_001311278Link to BLAST:NP_001311278.1
Original member Current member NCBI NM_001324350.2 NP_001311279.1 Accepted alive Link to Nucleotide Sequence:NM_001324350.2Link to Protein Sequence:NP_001311279.1Re-query CCDS DB by Nucleotide ID:NM_001324350Re-query CCDS DB by Protein ID:NP_001311279Link to BLAST:NP_001311279.1
Original member Current member NCBI NM_001324351.2 NP_001311280.1 Accepted alive Link to Nucleotide Sequence:NM_001324351.2Link to Protein Sequence:NP_001311280.1Re-query CCDS DB by Nucleotide ID:NM_001324351Re-query CCDS DB by Protein ID:NP_001311280Link to BLAST:NP_001311280.1
Original member Current member NCBI NM_005674.3 NP_005665.2 Accepted alive Link to Nucleotide Sequence:NM_005674.3Link to Protein Sequence:NP_005665.2Re-query CCDS DB by Nucleotide ID:NM_005674Re-query CCDS DB by Protein ID:NP_005665Link to BLAST:NP_005665.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092752.1 458 Q16600 458 100% 0 0
NP_001092753.1 458 Q16600 458 100% 0 0
NP_001092754.1 458 Q16600 458 100% 0 0
NP_001311276.1 458 Q16600 458 100% 0 0
NP_001311277.1 458 Q16600 458 100% 0 0
NP_001311278.1 458 Q16600 458 100% 0 0
NP_001311279.1 458 Q16600 458 100% 0 0
NP_001311280.1 458 Q16600 458 100% 0 0
NP_005665.2 458 Q16600 458 100% 0 0

Chromosomal Locations for CCDS 41502.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 43556703 43558079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGCCAGTACAATTACTGGAAGTCAGGATTGTATTGTGAATCATCGAGGGGAAGTGGATGGGGAGCCTG
AACTAGATATTTCCCCTTGTCAACAGTGGGGAGAAGCATCTTCTCCTATTTCCAGAAACAGGGACAGTGT
GATGACTCTTCAAAGTGGTTGTTTCGAAAACATTGAAAGTGAAACATATTTGCCTTTGAAAGTCTCAAGC
CAAATAGACACACAAGACTCTTCAGTGAAGTTCTGTAAGAATGAGCCTCAGGATCATCAGGAAAGCAGAC
GTCTCTTTGTAATGGAAGAAAGCACTGAGAGAAAAGTGATAAAGGGGGAAAGTTGTTCAGAGAACCTTCA
AGTTAAACTGGTGTCTGATGGACAAGAACTGGCCTCGCCATTGTTAAATGGTGAGGCAACTTGCCAGAAT
GGCCAGTTAAAAGAATCTTTGGATCCCATTGACTGTAACTGCAAAGACATTCATGGATGGAAATCACAGG
TGGTCAGTTGTAGTCAGCAGAGAGCTCATACAGAGGAGAAACCCTGTGACCATAATAACTGTGGGAAAAT
ACTTAACACCAGCCCAGATGGTCATCCATATGAGAAAATCCACACTGCAGAGAAACAATACGAATGTAGT
CAGTGTGGTAAGAACTTCAGTCAAAGCTCAGAGCTACTACTTCATCAGAGAGACCACACAGAAGAAAAAC
CCTACAAATGTGAGCAATGTGGGAAGGGCTTCACAAGGAGCTCGAGTCTGCTTATCCATCAGGCAGTCCA
CACAGATGAGAAGCCTTATAAGTGTGACAAGTGTGGGAAGGGCTTCACCAGGAGCTCAAGTCTGCTCATC
CATCATGCCGTCCATACAGGCGAAAAACCTTATAAATGTGACAAGTGTGGGAAGGGCTTTAGTCAGAGCT
CCAAACTGCACATCCACCAGCGAGTCCACACTGGAGAGAAGCCCTATGAGTGTGAGGAGTGTGGTATGAG
CTTCAGTCAGCGCTCAAACCTGCACATCCACCAGCGAGTACACACAGGAGAGAGGCCCTACAAGTGTGGT
GAGTGTGGGAAGGGCTTCAGTCAGAGCTCGAACCTTCACATTCACCGGTGCATCCACACAGGAGAGAAGC
CTTACCAATGCTATGAGTGTGGGAAGGGTTTCAGCCAGAGCTCGGATCTTCGCATCCATCTCAGAGTCCA
CACTGGAGAGAAGCCCTATCACTGTGGCAAGTGTGGGAAGGGATTTAGCCAGAGTTCCAAACTCCTCATC
CACCAGAGAGTACATACTGGAGAGAAGCCCTATGAGTGCAGCAAGTGTGGGAAGGGCTTCAGCCAGAGCT
CCAACCTTCACATCCACCAGCGGGTTCACAAGAAAGATCCTCGCTAA

Translation (458 aa):
MASTITGSQDCIVNHRGEVDGEPELDISPCQQWGEASSPISRNRDSVMTLQSGCFENIESETYLPLKVSS
QIDTQDSSVKFCKNEPQDHQESRRLFVMEESTERKVIKGESCSENLQVKLVSDGQELASPLLNGEATCQN
GQLKESLDPIDCNCKDIHGWKSQVVSCSQQRAHTEEKPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECS
QCGKNFSQSSELLLHQRDHTEEKPYKCEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLI
HHAVHTGEKPYKCDKCGKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCG
ECGKGFSQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSSKLLI
HQRVHTGEKPYECSKCGKGFSQSSNLHIHQRVHKKDPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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