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Report for CCDS23455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23455.1 Public Mus musculus 9 Tmem108 23 108 98 CCDS HistoryNCBI Gene:81907Re-query CCDS DB by CCDS ID:23455.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049452.14 ENSMUSP00000046021.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049452.14Link to Ensembl Protein Viewer:ENSMUSP00000046021.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049452Re-query CCDS DB by Protein ID:ENSMUSP00000046021
Original member Current member EBI ENSMUST00000189588.6 ENSMUSP00000140027.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189588.6Link to Ensembl Protein Viewer:ENSMUSP00000140027.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189588Re-query CCDS DB by Protein ID:ENSMUSP00000140027
Original member Current member EBI ENSMUST00000189066.1 ENSMUSP00000141160.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189066.1Link to Ensembl Protein Viewer:ENSMUSP00000141160.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189066Re-query CCDS DB by Protein ID:ENSMUSP00000141160
Original member Current member NCBI NM_001359465.1 NP_001346394.1 Accepted alive Link to Nucleotide Sequence:NM_001359465.1Link to Protein Sequence:NP_001346394.1Re-query CCDS DB by Nucleotide ID:NM_001359465Re-query CCDS DB by Protein ID:NP_001346394Link to BLAST:NP_001346394.1
Original member Current member NCBI NM_178638.4 NP_848753.1 Accepted alive Link to Nucleotide Sequence:NM_178638.4Link to Protein Sequence:NP_848753.1Re-query CCDS DB by Nucleotide ID:NM_178638Re-query CCDS DB by Protein ID:NP_848753Link to BLAST:NP_848753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346394.1 574 Q8BHE4 574 100% 0 0
NP_848753.1 574 Q8BHE4 574 100% 0 0

Chromosomal Locations for CCDS 23455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 103484661 103484783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103489189 103489343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103498802 103500208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103609711 103609750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGAAGAGAAGTTTACAGGCCCTCTATTGCCAACTATTAAGCTTTCTCCTGACCTTGGCACTGACCAAAG
CACTGGTACTCGCTGTCCACGAACCATCTCCCAGGGAATCTCTACAGACCCTCCCCTCAGGCAGCCCCCC
AGGCACCATGGTGACAGCACCTCACAGCCCTACCAGACTCTCCTCTGTGCTGACACTGAATCCTACACCT
GATGGACCCTCATCACAGGCTGCAGCTACTCTGGAAACTACAGTATCTCATCCAGAAGGGCACCCTCCTA
CAGACACCACGTCTACAGTGATGGGGACAGCTGCCGTCCCGCATCCCGAAAGTCCTCTGCCCACAGGGTC
CCCTCCAGCTGCCATGACAACCACACCCTCCCACTCAGAGAGCCTCCCCCCAGGGGATGCTACCCCCACC
ACTACCCTGCCAACAAAGCCAGCAGGAACCACCAGCCGCCCCACAGTGGCCCCACGGGCCACCACTCGTC
GGCCCCCCAGACCCCCGGGCTCTTCCAGGAAGGGGGCTGGTGGTTCGACTCGCACTCTCACACCCGTACC
GGGTGGCCACTTGGCCAGGAAGGAAAGCCAGAGGGGACGAAACCAGAGCTCAGCACATCTGGGGCCGAAG
CGTCCTCTGGGGAAGATCTTCCAAATCTACAAGGGTAACTTTACGGGGTCTGCGGAGCCAGACCCCTCCG
CGCTCACGCCCAGGACCCCACTCGGGGGCTACTTCTCTTCGACACAGCCCCAGACAGTGTCTCCAGCTAC
AGCACCCAGAAGCACCTCACGGGTGCCCCCCACAACTTCCCTGGTACCTGTAAAGGACAAGCCAGGCTTT
ATCAGATCCAACCAGGGGAGTGGCCCCATCCTTACCAGCCCAGGAGGGGAGCCAGCTGCCACAGCAGCCA
CAGGTGCCCCTGCCAGTACACAGCCTGCCCCAGTGCCTTCTCAGAGCCCTCATGGTGACGTGCAGGACAG
CGCCAGCCACAGTGACTCTTGGCTTGCTGTCACACCTGACACTGACAGACCCACGTCTGCCAGCTCCGGG
GTCTTCACGGCTGCCACAGGGCCCACCCAGGCTGCCTTTGATGCCACTGTCTCAGCCCCTTCCCCGGGCA
TCCCTCAGGGACCATCTGCAACCCCTCAGGCCCCAACCCGGCCCTCTGGGGTCTCAGAAAGCACTGTTTC
TCCAGCAGAGGAAGAGGCTGAGGCCTCCCCCACGACAACCGACAGGGGCCCCAGACCTCTCTCCACAGTG
CTGTCCACAGCCACGGGCAACTTCCTCAACCGCCTGGTCCCTGCTGGGACCTGGAAGCCGGGGACTGTGG
CCAACATCTCCCACGTGGCTGAAGGGGACAAACCCCAGCACAGAGCCACCATCTGCTTGAGCAAGATGGA
TATTGCCTGGGTCATCGTGGCCATCAGTGTCCCCATCTCCTCCTGCTCGGTCCTGTTGACAGTGTGCTGC
ATGAGGAGGAAGAAGAAGACGGCCAACCCTGAGAACAACCTGAGCTACTGGAACAATGCCATCACAATGG
ACTACTTCAACAGACACGCGGTGGAGCTCCCGAGGGAGATCCAGTCCCTAGAGACCTCAGAGGACCAGCT
CTCAGAGCCCCGCTCCCCAGCCAATGGCGACTATCGAGACACTGGGATGGTCCTCGTGAACCCCTTCTGC
CAGGAAACACTGTTCGTGGGAAACGACCAAGTTTCCGAGATCTAG

Translation (574 aa):
MKRSLQALYCQLLSFLLTLALTKALVLAVHEPSPRESLQTLPSGSPPGTMVTAPHSPTRLSSVLTLNPTP
DGPSSQAAATLETTVSHPEGHPPTDTTSTVMGTAAVPHPESPLPTGSPPAAMTTTPSHSESLPPGDATPT
TTLPTKPAGTTSRPTVAPRATTRRPPRPPGSSRKGAGGSTRTLTPVPGGHLARKESQRGRNQSSAHLGPK
RPLGKIFQIYKGNFTGSAEPDPSALTPRTPLGGYFSSTQPQTVSPATAPRSTSRVPPTTSLVPVKDKPGF
IRSNQGSGPILTSPGGEPAATAATGAPASTQPAPVPSQSPHGDVQDSASHSDSWLAVTPDTDRPTSASSG
VFTAATGPTQAAFDATVSAPSPGIPQGPSATPQAPTRPSGVSESTVSPAEEEAEASPTTTDRGPRPLSTV
LSTATGNFLNRLVPAGTWKPGTVANISHVAEGDKPQHRATICLSKMDIAWVIVAISVPISSCSVLLTVCC
MRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFC
QETLFVGNDQVSEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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