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Report for CCDS44644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44644.1 Public Homo sapiens 11 CAPN1 24 110 108 CCDS HistoryNCBI Gene:823Re-query CCDS DB by CCDS ID:44644.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44644.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000279247.11 ENSP00000279247.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000279247.11Link to Ensembl Protein Viewer:ENSP00000279247.7Re-query CCDS DB by Nucleotide ID:ENST00000279247Re-query CCDS DB by Protein ID:ENSP00000279247
Original member Current member EBI ENST00000533129.5 ENSP00000431686.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533129.5Link to Ensembl Protein Viewer:ENSP00000431686.1Re-query CCDS DB by Nucleotide ID:ENST00000533129Re-query CCDS DB by Protein ID:ENSP00000431686
Original member Current member EBI ENST00000527323.5 ENSP00000431984.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527323.5Link to Ensembl Protein Viewer:ENSP00000431984.1Re-query CCDS DB by Nucleotide ID:ENST00000527323Re-query CCDS DB by Protein ID:ENSP00000431984
Original member Current member EBI ENST00000524773.5 ENSP00000434176.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524773.5Link to Ensembl Protein Viewer:ENSP00000434176.1Re-query CCDS DB by Nucleotide ID:ENST00000524773Re-query CCDS DB by Protein ID:ENSP00000434176
Original member Current member EBI ENST00000533820.5 ENSP00000435272.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533820.5Link to Ensembl Protein Viewer:ENSP00000435272.1Re-query CCDS DB by Nucleotide ID:ENST00000533820Re-query CCDS DB by Protein ID:ENSP00000435272
Original member Current member NCBI NM_001198868.2 NP_001185797.1 Accepted alive Link to Nucleotide Sequence:NM_001198868.2Link to Protein Sequence:NP_001185797.1Re-query CCDS DB by Nucleotide ID:NM_001198868Re-query CCDS DB by Protein ID:NP_001185797Link to BLAST:NP_001185797.1
Original member Current member NCBI NM_001198869.2 NP_001185798.1 Accepted alive Link to Nucleotide Sequence:NM_001198869.2Link to Protein Sequence:NP_001185798.1Re-query CCDS DB by Nucleotide ID:NM_001198869Re-query CCDS DB by Protein ID:NP_001185798Link to BLAST:NP_001185798.1
Original member Current member NCBI NM_005186.4 NP_005177.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005186.4Link to Protein Sequence:NP_005177.2Re-query CCDS DB by Nucleotide ID:NM_005186Re-query CCDS DB by Protein ID:NP_005177Link to BLAST:NP_005177.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185797.1 714 P07384 714 100% 0 0
NP_001185798.1 714 P07384 714 100% 0 0
NP_005177.2 714 P07384 714 100% 0 0

Chromosomal Locations for CCDS 44644.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65182702 65182968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65183128 65183197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65183474 65183592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65185917 65186050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65186170 65186338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65187215 65187298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65187955 65188040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65188414 65188488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65188586 65188746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65204683 65204858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65205710 65205721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65206463 65206674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65206780 65206819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65208055 65208120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65208205 65208262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65209323 65209387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65209849 65209917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65210018 65210096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65210336 65210452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65210814 65210872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65211260 65211286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2145 nt):
ATGTCGGAGGAGATCATCACGCCGGTGTACTGCACTGGGGTGTCAGCCCAAGTGCAGAAGCAGCGGGCCA
GG
GAGCTGGGCCTGGGCCGCCATGAGAATGCCATCAAGTACCTGGGCCAGGATTATGAGCAGCTGCGGGT
G
CGATGCCTGCAGAGTGGGACCCTCTTCCGTGATGAGGCCTTCCCCCCGGTACCCCAGAGCCTGGGTTAC
AAG
GACCTGGGTCCCAATTCCTCCAAGACCTATGGCATCAAGTGGAAGCGTCCCACGGAACTGCTGTCAA
AC
CCCCAGTTCATTGTGGATGGAGCTACCCGCACAGACATCTGCCAGGGAGCACTGGGGGACTGCTGGCT
C
TTGGCGGCCATCGCCTCCCTCACTCTCAACGACACCCTCCTGCACCGAGTGGTTCCGCACGGCCAGAGC
TTC
CAGAATGGCTATGCCGGCATCTTCCATTTCCAGCTGTGGCAATTTGGGGAGTGGGTGGACGTGGTCG
TG
GATGACCTGCTGCCCATCAAGGACGGGAAGCTAGTGTTCGTGCACTCTGCCGAAGGCAACGAGTTCTG
G
AGCGCCCTGCTTGAGAAGGCCTATGCCAAGGTAAATGGCAGCTACGAGGCCCTGTCAGGGGGCAGCACC
TCA
GAGGGCTTTGAGGACTTCACAGGCGGGGTTACCGAGTGGTACGAGTTGCGCAAGGCTCCCAGTGACC
TC
TACCAGATCATCCTCAAGGCGCTGGAGCGGGGCTCCCTGCTGGGCTGCTCCATAGACATCTCCAGCGT
T
CTAGACATGGAGGCCATCACTTTCAAGAAGTTGGTGAAGGGCCATGCCTACTCTGTGACCGGGGCCAAG
CAG
GTGAACTACCGAGGCCAGGTGGTGAGCCTGATCCGGATGCGGAACCCCTGGGGCGAGGTGGAGTGGA
CG
GGAGCCTGGAGCGACAGCTCCTCAGAGTGGAACAACGTGGACCCATATGAACGGGACCAGCTCCGGGT
C
AAGATGGAGGACGGGGAGTTCTGGATGTCATTCCGAGACTTCATGCGGGAGTTCACCCGCCTGGAGATC
TGC
AACCTCACACCCGACGCCCTCAAGAGCCGGACCATCCGCAAATGGAACACCACACTCTACGAAGGCA
CC
TGGCGGCGGGGGAGCACCGCGGGGGGCTGCCGAAACTACCCAGCCACCTTCTGGGTGAACCCTCAGTT
C
AAGATCCGGCTGGATGAGACGGATGACCCGGACGACTACGGGGACCGCGAGTCAGGCTGCAGCTTCGTG
CTC
GCCCTTATGCAGAAGCACCGTCGCCGCGAGCGCCGCTTCGGCCGCGACATGGAGACTATTGGCTTCG
CG
GTCTACGAGGTCCCTCCGGAGCTGGTGGGCCAGCCGGCCGTACACTTGAAGCGTGACTTCTTCCTGGC
C
AATGCGTCTCGGGCGCGCTCAGAGCAGTTCATCAACCTGCGAGAGGTCAGCACCCGCTTCCGCCTGCCA
CCC
GGGGAGTATGTGGTGGTGCCCTCCACCTTCGAGCCCAACAAGGAGGGCGACTTCGTGCTGCGCTTCT
TC
TCAGAGAAGAGTGCTGGGACTGTGGAGCTGGATGACCAGATCCAGGCCAATCTCCCCGATGAGCAAGT
G
CTCTCAGAAGAGGAGATTGACGAGAACTTCAAGGCCCTCTTCAGGCAGCTGGCAGGGGAGGACATGGAG
ATC
AGCGTGAAGGAGTTGCGGACAATCCTCAATAGGATCATCAGCAAACACAAAGACCTGCGGACCAAGG
GC
TTCAGCCTAGAGTCGTGCCGCAGCATGGTGAACCTCATGGATCGTGATGGCAATGGGAAGCTGGGCCT
G
GTGGAGTTCAACATCCTGTGGAACCGCATCCGGAATTACCTGTCCATCTTCCGGAAGTTTGACCTGGAC
AAG
TCGGGCAGCATGAGTGCCTACGAGATGCGGATGGCCATTGAGTCGGCAGGCTTCAAGCTCAACAAGA
AG
CTGTACGAGCTCATCATCACCCGCTACTCGGAGCCCGACCTGGCGGTCGACTTTGACAATTTCGTTTG
C
TGCCTGGTGCGGCTAGAGACCATGTTCCGATTTTTCAAAACTCTGGACACAGATCTGGATGGAGTTGTG
ACC
TTTGACTTGTTTAAGTGGTTGCAGCTGACCATGTTTGCATGA


Translation (714 aa):
MSEEIITPVYCTGVSAQVQKQRARELGLGRHENAIKYLGQDYEQLRVRCLQSGTLFRDEAFPPVPQSLGY
K
DLGPNSSKTYGIKWKRPT
ELLSNPQFIVDGATRTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQS
F
QNGYAGIFHFQ
LWQFGEWVDVVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALSGGST
S
EGFEDFTGGVTEWYELRKAPSDLYQIILKALERGSLLGCSID
ISSVLDMEAITFKKLVKGHAYSVTGAK
Q
VNYRGQVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQLRVKMEDGEFWMSFRDFMREFTRLEI
C
NLTPDALKSRTIRKWNTTLYEGTWRRGSTAGGCRNYP
ATFWVNPQFKIRLDETDDPDDYGDRESGCSFV
L
ALMQKHRRRERRFGRDMETIGFAVYE
VPPELVGQPAVHLKRDFFLANASRARSEQFINLREVSTRFRLP
P
GEYVVVPSTFEPNKEGDFVLRFFSEKSAGT
VELDDQIQANLPDEQVLSEEEIDENFKALFRQLAGEDME
I
SVKELRTILNRIISK
HKDLRTKGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLD
K
SGSMSAYEMRMAIESA
GFKLNKKLYELIITRYSEPDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVV
T
FDLFK
WLQLTMFA



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser