NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19770.1 Public Mus musculus 5 Actl6b 23 108 98 CCDS HistoryNCBI Gene:83766Re-query CCDS DB by CCDS ID:19770.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000139395.7 ENSMUSP00000119356.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139395.7Link to Ensembl Protein Viewer:ENSMUSP00000119356.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139395Re-query CCDS DB by Protein ID:ENSMUSP00000119356
Original member NCBI NM_031404.5 NP_113581.1 Updated not alive Link to Nucleotide Sequence:NM_031404.5Link to Protein Sequence:NP_113581.1Re-query CCDS DB by Nucleotide ID:NM_031404Re-query CCDS DB by Protein ID:NP_113581
Current member NCBI NM_031404.6 NP_113581.1 Accepted alive Link to Nucleotide Sequence:NM_031404.6Link to Protein Sequence:NP_113581.1Re-query CCDS DB by Nucleotide ID:NM_031404Re-query CCDS DB by Protein ID:NP_113581Link to BLAST:NP_113581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113581.1 426 Q99MR0 426 100% 0 0

Chromosomal Locations for CCDS 19770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137553635 137553659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137554064 137554140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137554513 137554678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137554996 137555096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137563107 137563204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137564491 137564585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137564653 137564759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137565691 137565780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137565977 137566038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137566530 137566644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137566797 137566877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137566973 137567068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137567257 137567343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137569306 137569386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGAGCGGGGGCGTCTACGGCGGAGATGAGGTGGGGGCGCTCGTCTTTGACATTGGCTCTTTCTCAGTCC
GAGCTGGGTACGCTGGGGAGGACTGCCCCAAGGCTGACTTCCCCACCACTGTGGGGCTGCTGGCCGCAGA
AGAGGGGGGCGGGCTGGAGCTGGAGGGGGAGAAAGAGAAGAAAGGGAAGATTTTCCACATCGACACCAAT
GCCCTGCACGTGCCTCGGGATGGAGCGGAGGTCATGTCGCCCCTCAAGAATGGCATGATTGAGGACTGGG
AGTGCTTCCGAGCCATCCTGGATCATACCTACAGCAAACATGTCAAGTCCGAGCCAAACCTGCACCCAGT
ACTCATGTCGGAGGCTCCGTGGAACACTCGGGCCAAGCGGGAGAAGCTGACGGAGCTGATGTTCGAGCAG
TACAACATTCCTGCCTTCTTCTTATGCAAGACGGCCGTGCTCACAGCCTTTGCAAATGGACGCTCCACAG
GCCTGGTGCTGGACAGTGGGGCCACCCACACTACAGCCATCCCAGTCCATGATGGCTATGTCCTACAGCA
AGGCATCGTCAAGTCCCCCCTGGCAGGGGACTTCATCTCCATGCAGTGCCGGGAGCTCTTCCAGGAAATG
GCTATTGATATCATTCCTCCTTACATGATTGCAGCCAAGGAGCCTGTACGGGAGGGAGCCCCCCCAAACT
GGAAGAAGAAGGAGAAGCTACCCCAAGTCTCCAAGTCCTGGCATAACTACATGTGTAACGAGGTGATCCA
AGACTTCCAGGCCTCCGTACTGCAGGTGTCTGATTCCCCTTACGATGAACAGGTAGCTGCACAAATGCCC
ACTGTGCATTATGAAATGCCCAATGGCTACAACACAGACTACGGCGCTGAGCGACTTCGAATCCCTGAGG
GCCTGTTTGATCCCTCTAATGTCAAGGGCCTGTCCGGGAATACCATGCTAGGAGTGGGTCACGTGGTCAC
CACCAGCATCGGCATGTGTGACATTGACATTCGCCCGGGTCTCTATGGCAGTGTCATTGTCACTGGCGGC
AACACTCTGCTTCAGGGGTTCACAGACAGACTTAATCGGGAGCTTTCTCAGAAGACCCCACCGAGCATGC
GTCTTAAGCTCATCGCCAGCAACAGCACCATGGAACGCAAGTTCAGCCCCTGGATTGGAGGCTCCATCTT
GGCCTCACTGGGCACATTCCAGCAGATGTGGATCTCCAAACAGGAATACGAGGAGGGAGGGAAGCAGTGC
GTGGAGCGGAAGTGCCCCTGA

Translation (426 aa):
MSGGVYGGDEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTN
ALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQ
YNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFISMQCRELFQEM
AIDIIPPYMIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMP
TVHYEMPNGYNTDYGAERLRIPEGLFDPSNVKGLSGNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGG
NTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQC
VERKCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH