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Report for CCDS12798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12798.1 Public Homo sapiens 19 SYT3 24 110 108 CCDS HistoryNCBI Gene:84258Re-query CCDS DB by CCDS ID:12798.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12798.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338916.8 ENSP00000340914.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338916.8Link to Ensembl Protein Viewer:ENSP00000340914.3Re-query CCDS DB by Nucleotide ID:ENST00000338916Re-query CCDS DB by Protein ID:ENSP00000340914
Original member Current member EBI ENST00000593901.5 ENSP00000468982.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000593901.5Link to Ensembl Protein Viewer:ENSP00000468982.1Re-query CCDS DB by Nucleotide ID:ENST00000593901Re-query CCDS DB by Protein ID:ENSP00000468982
Original member Current member EBI ENST00000600079.6 ENSP00000469398.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000600079.6Link to Ensembl Protein Viewer:ENSP00000469398.1Re-query CCDS DB by Nucleotide ID:ENST00000600079Re-query CCDS DB by Protein ID:ENSP00000469398
Original member Current member NCBI NM_001160328.2 NP_001153800.1 Accepted alive Link to Nucleotide Sequence:NM_001160328.2Link to Protein Sequence:NP_001153800.1Re-query CCDS DB by Nucleotide ID:NM_001160328Re-query CCDS DB by Protein ID:NP_001153800Link to BLAST:NP_001153800.1
Original member Current member NCBI NM_001160329.2 NP_001153801.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001160329.2Link to Protein Sequence:NP_001153801.1Re-query CCDS DB by Nucleotide ID:NM_001160329Re-query CCDS DB by Protein ID:NP_001153801Link to BLAST:NP_001153801.1
Original member Current member NCBI NM_032298.3 NP_115674.1 Accepted alive Link to Nucleotide Sequence:NM_032298.3Link to Protein Sequence:NP_115674.1Re-query CCDS DB by Nucleotide ID:NM_032298Re-query CCDS DB by Protein ID:NP_115674Link to BLAST:NP_115674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153800.1 590 Q9BQG1 590 100% 0 0
NP_001153801.1 590 Q9BQG1 590 100% 0 0
NP_115674.1 590 Q9BQG1 590 100% 0 0

Chromosomal Locations for CCDS 12798.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 50622690 50622755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50625162 50625294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50625393 50625564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50625897 50626017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50629294 50629512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50629784 50630171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50632286 50632811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50637264 50637411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGTCAGGAGACTACGAGGATGACCTCTGCCGGCGGGCACTCATCCTGGTCTCGGACCTCTGTGCGCGGG
TCCGAGATGCTGACACCAACGACAGGTGCCAGGAGTTCAATGACCGAATCCGAGGCTATCCCCGGGGTCC
AGATGCAGACATCTCCGTGAGCCTGCTGTCGGTCATCGTGACATTCTGTGGCATTGTCCTTCTGGGTGTC
TCTCTCTTCGTGTCCTGGAAGTTGTGCTGGGTGCCCTGGCGGGACAAGGGAGGCTCGGCAGTGGGCGGTG
GCCCCCTGCGCAAAGACCTAGGCCCTGGTGTCGGGCTGGCAGGCCTGGTAGGCGGAGGCGGGCACCACCT
GGCGGCTGGCCTGGGTGGCCATCCTCTGCTGGGCGGCCCACACCACCATGCCCATGCCGCCCACCATCCA
CCCTTTGCTGAGCTGCTGGAGCCAGGCAGCCTGGGGGGTTCTGACACCCCTGAGCCCTCCTACTTGGACA
TGGACTCGTATCCAGAGGCTGCAGCAGCAGCAGTGGCCGCTGGGGTCAAACCGAGCCAAACATCCCCTGA
GCTGCCCTCTGAGGGGGGAGCAGGCTCTGGGTTGCTCCTGCTGCCCCCCAGTGGTGGGGGCTTGCCCAGT
GCCCAGTCACATCAGCAGGTCACAAGCCTGGCACCCACTACCAGGTACCCAGCCCTGCCCCGACCCCTCA
CCCAGCAGACTCTGACCTCCCAGCCGGACCCCAGCAGTGAGGAGCGGCCACCTGCCCTGCCCTTACCCCT
GCCTGGAGGCGAGGAAAAAGCCAAACTCATTGGGCAGATTAAGCCAGAGCTGTACCAGGGGACTGGCCCT
GGTGGCCGGCGGAGCGGTGGGGGCCCAGGCTCTGGAGAGGCAGGCACAGGGGCACCCTGTGGCCGTATCA
GCTTCGCCCTGCGGTACCTCTATGGCTCGGACCAGCTGGTGGTGAGGATCCTGCAGGCCCTGGACCTCCC
TGCCAAGGACTCCAACGGCTTCTCAGACCCCTACGTCAAGATCTACCTGCTGCCTGACCGCAAGAAAAAG
TTTCAGACCAAGGTGCACAGGAAGACCCTGAACCCCGTCTTCAATGAGACGTTTCAATTCTCGGTGCCCC
TGGCCGAGCTGGCCCAACGCAAACTGCACTTCAGCGTCTATGACTTTGACCGCTTCTCGCGGCACGACCT
CATCGGCCAGGTGGTGCTGGACAACCTCCTGGAGCTGGCCGAGCAGCCCCCTGACCGCCCGCTCTGGAGG
GACATCGTGGAGGGCGGCTCGGAAAAAGCAGATCTTGGGGAGCTCAACTTCTCACTCTGCTACCTCCCCA
CGGCCGGGCGCCTCACCGTGACCATCATCAAAGCCTCTAACCTCAAAGCGATGGACCTCACTGGCTTCTC
AGACCCCTACGTGAAGGCCTCCCTGATCAGCGAGGGGCGGCGTCTGAAGAAGCGGAAAACCTCCATCAAG
AAGAACACGCTGAACCCCACCTATAATGAGGCGCTGGTGTTCGACGTGGCCCCCGAGAGCGTGGAGAACG
TGGGGCTCAGCATCGCCGTGGTAGACTACGACTGCATCGGGCACAACGAGGTGATCGGCGTGTGCCGTGT
GGGCCCCGACGCTGCCGACCCGCACGGCCGCGAGCACTGGGCAGAGATGCTGGCCAATCCCCGCAAGCCC
GTGGAGCACTGGCATCAGCTAGTGGAGGAAAAGACTGTGACCAGCTTCACAAAAGGCAGCAAAGGACTAT
CAGAGAAAGAGAACTCCGAGTGA

Translation (590 aa):
MSGDYEDDLCRRALILVSDLCARVRDADTNDRCQEFNDRIRGYPRGPDADISVSLLSVIVTFCGIVLLGV
SLFVSWKLCWVPWRDKGGSAVGGGPLRKDLGPGVGLAGLVGGGGHHLAAGLGGHPLLGGPHHHAHAAHHP
PFAELLEPGSLGGSDTPEPSYLDMDSYPEAAAAAVAAGVKPSQTSPELPSEGGAGSGLLLLPPSGGGLPS
AQSHQQVTSLAPTTRYPALPRPLTQQTLTSQPDPSSEERPPALPLPLPGGEEKAKLIGQIKPELYQGTGP
GGRRSGGGPGSGEAGTGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKK
FQTKVHRKTLNPVFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWR
DIVEGGSEKADLGELNFSLCYLPTAGRLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK
KNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPDAADPHGREHWAEMLANPRKP
VEHWHQLVEEKTVTSFTKGSKGLSEKENSE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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