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Report for CCDS2112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2112.1 Public Homo sapiens 2 IL1F10 24 110 108 CCDS HistoryNCBI Gene:84639Re-query CCDS DB by CCDS ID:2112.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2112.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341010.6 ENSP00000341794.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341010.6Link to Ensembl Protein Viewer:ENSP00000341794.2Re-query CCDS DB by Nucleotide ID:ENST00000341010Re-query CCDS DB by Protein ID:ENSP00000341794
Original member Current member EBI ENST00000393197.3 ENSP00000376893.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393197.3Link to Ensembl Protein Viewer:ENSP00000376893.2Re-query CCDS DB by Nucleotide ID:ENST00000393197Re-query CCDS DB by Protein ID:ENSP00000376893
Original member Current member NCBI NM_032556.6 NP_115945.4 Accepted alive Link to Nucleotide Sequence:NM_032556.6Link to Protein Sequence:NP_115945.4Re-query CCDS DB by Nucleotide ID:NM_032556Re-query CCDS DB by Protein ID:NP_115945Link to BLAST:NP_115945.4
Original member Current member NCBI NM_173161.3 NP_775184.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173161.3Link to Protein Sequence:NP_775184.1Re-query CCDS DB by Nucleotide ID:NM_173161Re-query CCDS DB by Protein ID:NP_775184Link to BLAST:NP_775184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115945.4 152 Q8WWZ1-1 152 100% 0 0
NP_775184.1 152 Q8WWZ1-1 152 100% 0 0

Chromosomal Locations for CCDS 2112.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 113072739 113072770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113074329 113074414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113074723 113074850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113075152 113075364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGTGTTCCCTCCCCATGGCAAGATACTACATAATTAAATATGCAGACCAGAAGGCTCTATACACAAGAG
ATGGCCAGCTGCTGGTGGGAGATCCTGTTGCAGACAACTGCTGTGCAGAGAAGATCTGCATACTTCCTAA
CAGAGGCTTGGCCCGCACCAAGGTCCCCATTTTCCTGGGGATCCAGGGAGGGAGCCGCTGCCTGGCATGT
GTGGAGACAGAAGAGGGGCCTTCCCTACAGCTGGAGGATGTGAACATTGAGGAACTGTACAAAGGTGGTG
AAGAGGCCACACGCTTCACCTTCTTCCAGAGCAGCTCAGGCTCCGCCTTCAGGCTTGAGGCTGCTGCCTG
GCCTGGCTGGTTCCTGTGTGGCCCGGCAGAGCCCCAGCAGCCAGTACAGCTCACCAAGGAGAGTGAGCCC
TCAGCCCGTACCAAGTTTTACTTTGAACAGAGCTGGTAG

Translation (152 aa):
MCSLPMARYYIIKYADQKALYTRDGQLLVGDPVADNCCAEKICILPNRGLARTKVPIFLGIQGGSRCLAC
VETEEGPSLQLEDVNIEELYKGGEEATRFTFFQSSSGSAFRLEAAAWPGWFLCGPAEPQQPVQLTKESEP
SARTKFYFEQSW


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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