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Report for CCDS3606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3606.1 Public Homo sapiens 4 GPAT3 24 110 108 CCDS HistoryNCBI Gene:84803Re-query CCDS DB by CCDS ID:3606.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3606.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264409.5 ENSP00000264409.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264409.5Link to Ensembl Protein Viewer:ENSP00000264409.4Re-query CCDS DB by Nucleotide ID:ENST00000264409Re-query CCDS DB by Protein ID:ENSP00000264409
Original member Current member EBI ENST00000395226.6 ENSP00000378651.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395226.6Link to Ensembl Protein Viewer:ENSP00000378651.2Re-query CCDS DB by Nucleotide ID:ENST00000395226Re-query CCDS DB by Protein ID:ENSP00000378651
Original member Current member EBI ENST00000611707.4 ENSP00000482571.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611707.4Link to Ensembl Protein Viewer:ENSP00000482571.1Re-query CCDS DB by Nucleotide ID:ENST00000611707Re-query CCDS DB by Protein ID:ENSP00000482571
Original member Current member NCBI NM_001256421.1 NP_001243350.1 Accepted alive Link to Nucleotide Sequence:NM_001256421.1Link to Protein Sequence:NP_001243350.1Re-query CCDS DB by Nucleotide ID:NM_001256421Re-query CCDS DB by Protein ID:NP_001243350Link to BLAST:NP_001243350.1
Original member Current member NCBI NM_001256422.1 NP_001243351.1 Accepted alive Link to Nucleotide Sequence:NM_001256422.1Link to Protein Sequence:NP_001243351.1Re-query CCDS DB by Nucleotide ID:NM_001256422Re-query CCDS DB by Protein ID:NP_001243351Link to BLAST:NP_001243351.1
Original member Current member NCBI NM_032717.5 NP_116106.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032717.5Link to Protein Sequence:NP_116106.2Re-query CCDS DB by Nucleotide ID:NM_032717Re-query CCDS DB by Protein ID:NP_116106Link to BLAST:NP_116106.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243350.1 434 Q53EU6 434 100% 0 0
NP_001243351.1 434 Q53EU6 434 100% 0 0
NP_116106.2 434 Q53EU6 434 100% 0 0

Chromosomal Locations for CCDS 3606.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 83536623 83536763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83544536 83544602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83581562 83581832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83587255 83587329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83588210 83588299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83590199 83590292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83594845 83594960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83596858 83596913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83597430 83597515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83598051 83598179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83598644 83598723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83604668 83604767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCGGCTTCATCCTTT
TACCTTCGGTCTTCGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGA
GTGGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAGTCGATTCTTAAAAACTCTGCTTCTGTTGGT
ATTATCCAAAGAGATGAGTCACCCATGGAAAAAGGGCTCTCTGGTCTACGAGGAAGGGACTTTGAGCTGT
CTGACGTGTTTTATTTCTCCAAGAAGGGATTGGAAGCCATTGTAGAAGATGAAGTGACCCAGAGGTTTTC
CTCAGAGGAGCTAGTGTCATGGAATCTCCTCACAAGAACCAATGTAAATTTCCAGTACATCAGTCTGCGG
CTCACTATGGTGTGGGTGCTGGGCGTCATAGTGCGCTATTGTGTCCTACTGCCTCTGAGGGTTACCTTGG
CTTTCATTGGGATCAGTTTGCTGGTTATAGGAACTACACTGGTTGGGCAGCTGCCAGACAGCAGCCTCAA
AAACTGGCTGAGTGAACTGGTCCATCTGACTTGCTGCCGGATCTGTGTGCGAGCCCTCTCTGGTACCATT
CATTATCATAACAAGCAGTACAGACCCCAGAAGGGAGGCATTTGTGTTGCCAACCATACTTCCCCCATTG
ATGTTTTAATCTTGACAACGGATGGATGTTATGCTATGGTTGGCCAGGTTCATGGCGGCTTGATGGGAAT
TATTCAGAGAGCTATGGTCAAGGCTTGTCCTCATGTCTGGTTTGAACGCTCAGAAATGAAGGATCGACAC
CTGGTTACTAAGAGACTAAAAGAACATATTGCTGATAAGAAGAAACTACCCATACTAATTTTTCCTGAAG
GAACTTGCATCAACAATACTTCAGTCATGATGTTTAAAAAGGGGAGCTTTGAAATTGGAGGAACCATACA
TCCAGTTGCAATTAAGTATAACCCTCAGTTCGGTGATGCATTTTGGAACAGTAGTAAATACAACATGGTG
AGCTACCTGCTTCGAATGATGACCAGCTGGGCCATCGTCTGTGACGTGTGGTACATGCCCCCCATGACCA
GAGAGGAAGGAGAAGATGCAGTCCAGTTTGCTAACAGGGTTAAGTCTGCTATTGCTATACAAGGAGGCCT
GACTGAACTTCCCTGGGATGGAGGACTAAAGAGAGCAAAGGTGAAGGACATCTTTAAGGAAGAGCAGCAG
AAAAATTACAGCAAGATGATTGTGGGCAATGGATCTCTCAGCTAA

Translation (434 aa):
MEGAELAGKILSTWLTLVLGFILLPSVFGVSLGISEIYMKILVKTLEWATIRIEKGTPKESILKNSASVG
IIQRDESPMEKGLSGLRGRDFELSDVFYFSKKGLEAIVEDEVTQRFSSEELVSWNLLTRTNVNFQYISLR
LTMVWVLGVIVRYCVLLPLRVTLAFIGISLLVIGTTLVGQLPDSSLKNWLSELVHLTCCRICVRALSGTI
HYHNKQYRPQKGGICVANHTSPIDVLILTTDGCYAMVGQVHGGLMGIIQRAMVKACPHVWFERSEMKDRH
LVTKRLKEHIADKKKLPILIFPEGTCINNTSVMMFKKGSFEIGGTIHPVAIKYNPQFGDAFWNSSKYNMV
SYLLRMMTSWAIVCDVWYMPPMTREEGEDAVQFANRVKSAIAIQGGLTELPWDGGLKRAKVKDIFKEEQQ
KNYSKMIVGNGSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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