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Report for CCDS34550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34550.1 Public Homo sapiens 6 PPIL4 24 110 108 CCDS HistoryNCBI Gene:85313Re-query CCDS DB by CCDS ID:34550.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34550.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253329.3 ENSP00000253329.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253329.3Link to Ensembl Protein Viewer:ENSP00000253329.2Re-query CCDS DB by Nucleotide ID:ENST00000253329Re-query CCDS DB by Protein ID:ENSP00000253329
Original member Current member NCBI NM_139126.4 NP_624311.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139126.4Link to Protein Sequence:NP_624311.1Re-query CCDS DB by Nucleotide ID:NM_139126Re-query CCDS DB by Protein ID:NP_624311Link to BLAST:NP_624311.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_624311.1 492 Q8WUA2 492 100% 0 0

Chromosomal Locations for CCDS 34550.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149505453 149505704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149512155 149512302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149517354 149517450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149521060 149521171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149525143 149525209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149526652 149526776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149533458 149533574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149534678 149534774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149535596 149535738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149540942 149541059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149541367 149541431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149541519 149541586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149545936 149546005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGCGGTTCTACTGGAGACCACTTTAGGCGACGTCGTCATCGACTTGTACACCGAAGAACGGCCGCGTG
CCTGCTTGAATTTCTTGAAACTGTGCAAAATAAAATATTACAATTATTGCCTTATTCACAATGTACAGAG
GGATTTTATCATACAAACTGGCGATCCTACAGGGACTGGCCGTGGAGGAGAGTCTATCTTTGGCCAACTG
TATGGTGATCAAGCAAGCTTTTTTGAGGCAGAAAAAGTCCCAAGAATTAAGCACAAGAAGAAAGGCACAG
TGTCCATGGTGAATAATGGCAGTGATCAACATGGATCTCAGTTTCTTATCACCACAGGAGAAAATCTAGA
TTATCTTGATGGTGTCCATACGGTGTTTGGTGAGGTGACAGAAGGCATGGACATAATTAAGAAAATTAAT
GAGACCTTTGTTGACAAGGACTTTGTACCATATCAGGATATCAGGATAAATCATACGGTGATTTTAGATG
ATCCATTTGATGACCCTCCTGATTTATTAATCCCTGATCGATCACCAGAACCTACAAGGGAACAATTAGA
TAGTGGTCGAATAGGAGCAGATGAAGAAATTGATGATTTCAAAGGAAGATCAGCTGAGGAAGTAGAAGAA
ATAAAGGCAGAAAAAGAGGCTAAAACTCAGGCTATACTTTTGGAGATGGTGGGAGACCTACCTGATGCAG
ATATTAAACCTCCAGAAAATGTACTGTTTGTGTGTAAATTGAACCCAGTGACCACAGATGAGGATCTGGA
AATAATATTCTCTAGATTTGGGCCAATAAGAAGTTGTGAAGTTATCCGAGACTGGAAGACAGGAGAGTCC
CTCTGTTACGCTTTTATTGAATTTGAAAAGGAAGAAGATTGTGAGAAAGCATTCTTCAAAATGGACAATG
TGCTTATAGATGACAGAAGAATACATGTGGATTTTAGCCAGTCGGTTGCAAAGGTTAAATGGAAAGGAAA
AGGTGGGAAATACACCAAGAGTGATTTCAAGGAGTATGAAAAAGAACAGGATAAACCACCTAATTTGGTT
CTGAAAGATAAAGTAAAGCCCAAACAGGATACAAAATACGATCTTATATTAGATGAGCAGGCCGAAGACT
CAAAATCAAGTCACTCACACACAAGTAAAAAACACAAGAAGAAAACCCATCACTGTTCTGAAGAGAAAGA
AGATGAGGACTACATGCCAATCAAAAATACTAATCAGGATATCTATAGAGAAATGGGGTTTGGTCACTAT
GAAGAAGAAGAAAGCTGTTGGGAGAAACAAAAGAGTGAAAAGAGAGACCGAACTCAGAACCGAAGTCGTA
GCCGATCTCGAGAGAGGGATGGCCATTATAGTAATAGTCATAAATCAAAATACCAAACAGATCTTTATGA
AAGAGAAAGGAGTAAAAAGAGAGACCGAAGCAGAAGTCCAAAGAAGTCCAAAGATAAAGAAAAATCTAAG
TATAGATGA

Translation (492 aa):
MAVLLETTLGDVVIDLYTEERPRACLNFLKLCKIKYYNYCLIHNVQRDFIIQTGDPTGTGRGGESIFGQL
YGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIIKKIN
ETFVDKDFVPYQDIRINHTVILDDPFDDPPDLLIPDRSPEPTREQLDSGRIGADEEIDDFKGRSAEEVEE
IKAEKEAKTQAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGES
LCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQSVAKVKWKGKGGKYTKSDFKEYEKEQDKPPNLV
LKDKVKPKQDTKYDLILDEQAEDSKSSHSHTSKKHKKKTHHCSEEKEDEDYMPIKNTNQDIYREMGFGHY
EEEESCWEKQKSEKRDRTQNRSRSRSRERDGHYSNSHKSKYQTDLYERERSKKRDRSRSPKKSKDKEKSK
YR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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