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Report for CCDS23103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23103.1 Public Mus musculus 9 C2cd2l 23 108 98 CCDS HistoryNCBI Gene:71764Re-query CCDS DB by CCDS ID:23103.1Re-query CCDS DB by GeneID:71764See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23103.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065080.9 ENSMUSP00000065233.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065080.9Link to Ensembl Protein Viewer:ENSMUSP00000065233.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000065080Re-query CCDS DB by Protein ID:ENSMUSP00000065233
Original member NCBI NM_027909.2 NP_082185.2 Updated not alive Link to Nucleotide Sequence:NM_027909.2Link to Protein Sequence:NP_082185.2Re-query CCDS DB by Nucleotide ID:NM_027909Re-query CCDS DB by Protein ID:NP_082185
Current member NCBI NM_027909.3 NP_082185.2 Accepted alive Link to Nucleotide Sequence:NM_027909.3Link to Protein Sequence:NP_082185.2Re-query CCDS DB by Nucleotide ID:NM_027909Re-query CCDS DB by Protein ID:NP_082185Link to BLAST:NP_082185.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082185.2 706 Q80X80 706 100% 0 0

Chromosomal Locations for CCDS 23103.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44311056 44311267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44313506 44313791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44313878 44314011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44314155 44314256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44314880 44315054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44315147 44315274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44315364 44315428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44316106 44316214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44316306 44316417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44316511 44316627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44316708 44316818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44317000 44317119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44317583 44317678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44319535 44319888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGGATCCGGACTGGGGGCAGCGGGATGTGGGCTGGGCGGCCCTGCTGGTTCTCTTCGCCGCCTCGCTGA
TCACGGTATTGGGCTGGATGCTGCAGTATGCCCGGGGTTTGTGGCTGTCGCGAGCCGATGGGGGCCGAGA
CTCCCGACCTGCCTCAGCTGCTGAGCCCGGGGGTTCACTGCGCGAGCTGGGTGTGTGGCGTTCGCTGCTG
CGTTTGCGGGCGACCCGGACCAGCACCCCCGAGGAAGCCGGCGTACGGGGCCTCCTGGCTTCGCTCTTTG
CCTTCAAGTCTTTCCGGGAGAACTGGCAACGGGCTTGGGTGCGAGCCTTGAATGAGCAGGCCTGCAGGGA
CGGGAGCTCCATCCAAATCGCCTTTGAAGAGATACCCCAACTCCCACCAAGAGCCAGCATCAGTCATGTG
ACCTGCGTTGACCAATCAGAGCGCACCATGGTGCTGCATTGCCAGCTCTCTGCTGAGGAGGTGCGCTTCC
CCATCTCTGTGACCCAGCAGTCCCCCGCTGCCGTCTCCATGGAGACCTACCACGTCACTCTGACACTGCC
ACCAACACAGTTGGAAGTCAGCCTGGAGGAAATCCCTGATGAGGGGCTCCTGGTGTCCTGGGCCTTCACT
GACCGCCCAGAACTCAGCCTAAAGGTGCTTCCCAAGTTGCAGACTAGGGAGAGAGATGAGGAACAACCAG
AGCTCTCAACAGTTGAGGAACTGATCAAGGACGCTATAGTCAGCACTCAGCCCGCCATGATGGTCAACCT
CAGGGCCTGCTCTGCCCCAGGAGGCCTGGTACCCAGTGAGAAGCCACCCACGATGTCCCAGGCCCAGCCA
TCCATCCCCAGACCTACCCGATTATTCTTACGGCAGCTTCGAGCATCTCACCTGGGAAGTGAGCTAGGAG
GTACTGAGGAACTGTGCTGTGCCGCTGAGCTTGACAACCCCATGCAACAAAAGTGGACCAAACCCATGAG
GGCGGGCCCCGAGGTGGAATGGACCGAGGACCTAGCTCTGGATCTGGGTCCCCAGAGCCGGGAGCTGACC
CTCAAAGTGCTCCGGAGCAGCAGCTGTGGAGATGCTGAACTCCTTGGCCAAGCCACACTGCCTGTGGGCT
CACCCTCTAGACCGATGTCACGAAGACAGGTGTGCCCACTGACTCCAGGGCCCGGGAAATCCCTGAGCCC
GGCAGCCACCGTGACAGCGGAGCTACATTATGAGCAGGGTTCCCCTCGGAATCTGGGCACGCCCACCTCC
TCCACCCCTCGCCCCAGCATCACACCCACCAAGAAGATTGAGTTGGACCGGACCATCATGCCCGACGGCA
CAGTCGTCACCACTGTCACTACCGTCCAGTCCCGCCCCCGTGTAGATGGCAAACTAGACTCCCCCTCCCG
CTCCCCGTCCAAGGTGGAGGTGACTGAGAAGATGACAACCGTGCTGAGTGAGAGCAGCGGCCCCAGCAAT
GCCTCCCACAGCAGCAGCCGGGAGAGCCACCTTTCCAATGGCTTGGATCCAGTAGCAGAGACAGCCATTC
GCCAGCTGACTGAGCCCAGTGGGCGGGCAGCCAAGAAGACACCCACCAAGAGGAGCACGCTCATCATCTC
TGGTGTTTCCAAGGTGCCCATCGCCCAGGACGAGTTGGCTCTCTCCTTGGGTTACGCGGCATCTCTGGAA
GCCTCGATGCAAGATGATGCAGGAACCAGTGGTGGTCCTTCGTCACCTCCCTCAGACCCCTCAGCCACAT
CCCCAGGACCTGTTGATGCCCTCTCCAGTCCCACAAGTGTCCAGGAGGCAGATGAGACAACACGTTCAGA
CATCTCTGAGAGGCCGTCTGTGGATGATGTTGAGTCAGAAACAGGGTCCACTGGTGCCCTGGAGACCAGA
AGCCTCAAGGATCACAAAGTGAGTTTCCTGCGCAGTGGCACAAAGCTCATCTTCCGCCGGAGGCCCCGAC
AGAAGGAAGCTGGTCTGAGCCAGTCACACGATGACCTGTCCAACACGACGGCCACACCTAGCGTCCGGAA
GAAGGCTGGCAGCTTTTCCCGTCGCCTTATCAAGCGTTTTTCCTTCAAATCCAAACCCAAGGCCAATGGC
AACCCTAGCCCCCAGCTCTGA

Translation (706 aa):
MDPDWGQRDVGWAALLVLFAASLITVLGWMLQYARGLWLSRADGGRDSRPASAAEPGGSLRELGVWRSLL
RLRATRTSTPEEAGVRGLLASLFAFKSFRENWQRAWVRALNEQACRDGSSIQIAFEEIPQLPPRASISHV
TCVDQSERTMVLHCQLSAEEVRFPISVTQQSPAAVSMETYHVTLTLPPTQLEVSLEEIPDEGLLVSWAFT
DRPELSLKVLPKLQTRERDEEQPELSTVEELIKDAIVSTQPAMMVNLRACSAPGGLVPSEKPPTMSQAQP
SIPRPTRLFLRQLRASHLGSELGGTEELCCAAELDNPMQQKWTKPMRAGPEVEWTEDLALDLGPQSRELT
LKVLRSSSCGDAELLGQATLPVGSPSRPMSRRQVCPLTPGPGKSLSPAATVTAELHYEQGSPRNLGTPTS
STPRPSITPTKKIELDRTIMPDGTVVTTVTTVQSRPRVDGKLDSPSRSPSKVEVTEKMTTVLSESSGPSN
ASHSSSRESHLSNGLDPVAETAIRQLTEPSGRAAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASLE
ASMQDDAGTSGGPSSPPSDPSATSPGPVDALSSPTSVQEADETTRSDISERPSVDDVESETGSTGALETR
SLKDHKVSFLRSGTKLIFRRRPRQKEAGLSQSHDDLSNTTATPSVRKKAGSFSRRLIKRFSFKSKPKANG
NPSPQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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