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Report for CCDS29064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29064.1 Public Mus musculus 18 Npc1 23 108 98 CCDS HistoryNCBI Gene:18145Re-query CCDS DB by CCDS ID:29064.1Re-query CCDS DB by GeneID:18145See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025279.5 ENSMUSP00000025279.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025279.5Link to Ensembl Protein Viewer:ENSMUSP00000025279.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025279Re-query CCDS DB by Protein ID:ENSMUSP00000025279
Original member Current member NCBI NM_008720.2 NP_032746.2 Accepted alive Link to Nucleotide Sequence:NM_008720.2Link to Protein Sequence:NP_032746.2Re-query CCDS DB by Nucleotide ID:NM_008720Re-query CCDS DB by Protein ID:NP_032746Link to BLAST:NP_032746.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032746.2 1277 O35604 1277 100% 0 0

Chromosomal Locations for CCDS 29064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12190920 12191002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12191684 12191846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12193294 12193407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12194063 12194294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12195009 12195209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12196484 12196613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12197182 12197297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12197959 12198149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12198508 12198597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12199373 12199513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12199599 12199726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12200778 12200892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12201564 12201746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12202121 12202310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12204771 12204873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12208307 12208407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12210382 12210608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12211486 12211856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12212195 12212268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12213257 12213506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12214331 12214498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12219178 12219353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12221806 12221912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12223033 12223155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12236181 12236237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3834 nt):
ATGGGTGCGCACCACCCGGCCCTCGGCCTGCTGCTGCTGCTGCTGTGCCCTGCGCAGGTGTTTTCGCAAT
CCTGTGTTTGGTATGGAGAGTGTGGAATTGCGACTGGAGATAAGAGGTACAACTGTAAATATTCTGGCCC
ACCAAAACCCCTCCCAAAGGACGGCTATGACTTAGTGCAGGAACTCTGTCCAGGACTCTTCTTTGACAAT
GTCAGTCTCTGCTGTGACATTCAACAGCTTCAGACGCTGAAGAGTAACCTGCAGCTGCCCCTGCAGTTCC
TGTCCAGGTGTCCGTCATGTTTTTATAACCTAATGACCCTGTTTTGTGAGCTAACATGTAGCCCACACCA
GAGTCAGTTTCTGAATGTGACAGCAACTGAGGATTATTTTGATCCTAAGACACAGGAGAATAAAACAAAT
GTAAAGGAATTAGAGTACTTTGTCGGACAGAGCTTCGCGAATGCGATGTACAATGCCTGCCGTGATGTGG
AGGCGCCTTCCAGTAACGAGAAGGCCTTAGGACTCTTGTGTGGGAGGGATGCCCGTGCCTGCAATGCCAC
CAACTGGATTGAGTACATGTTCAATAAAGACAACGGACAAGCGCCATTTACCATCATTCCTGTGTTTTCA
GATCTTTCAATCCTTGGGATGGAGCCCATGAGAAATGCCACCAAAGGCTGCAATGAGTCTGTAGATGAGG
TCACGGGGCCATGTAGCTGCCAGGACTGCTCCATCGTCTGCGGCCCCAAGCCCCAGCCCCCACCCCCTCC
TATGCCCTGGAGGATCTGGGGCTTGGATGCCATGTATGTCATCATGTGGGTCACCTACGTGGCATTTCTG
TTTGTGTTTTTTGGAGCACTGTTGGCAGTGTGGTGCCACAGAAGGCGGTACTTTGTGTCTGAGTACACTC
CCATTGACAGTAACATCGCCTTTTCTGTGAATAGCAGTGACAAAGGGGAAGCCTCATGCTGTGACCCACT
TGGTGCAGCATTTGATGACTGTCTGAGGCGCATGTTCACAAAGTGGGGGGCTTTCTGTGTCCGAAATCCC
ACCTGCATCATTTTCTTCTCATTGGCCTTCATCACTGTGTGCTCTTCTGGCCTGGTATTTGTCCAGGTCA
CCACCAATCCTGTAGAGCTCTGGTCAGCCCCTCACAGTCAGGCCCGCTTGGAAAAGGAGTACTTTGACAA
GCACTTTGGGCCTTTCTTTCGCACGGAGCAGCTTATCATCCAGGCCCCCAACACCAGTGTTCATATCTAC
GAACCGTACCCCGCAGGAGCCGATGTGCCCTTCGGGCCTCCATTGAACAAAGAGATTCTGCACCAGGTTC
TGGACTTACAGATCGCCATTGAAAGCATCACCGCATCTTACAACAATGAAACCGTGACACTGCAGGACAT
CTGTGTGGCCCCCCTCTCTCCATACAACAAGAACTGCACCATTATGAGTGTGTTAAATTACTTCCAGAAC
AGCCATGCGGTGCTGGACAGCCAAGTAGGCGACGACTTCTATATCTACGCTGATTACCACACACACTTTC
TGTACTGTGTACGGGCTCCCGCCTCCTTGAATGATACGAGTTTGCTCCACGGTCCTTGCCTGGGTACATT
TGGAGGACCGGTGTTCCCGTGGCTTGTGTTGGGTGGCTATGATGATCAGAACTACAACAATGCCACCGCG
CTTGTGATCACCTTCCCCGTGAATAATTACTACAATGACACAGAGAGGCTCCAGAGGGCCTGGGCCTGGG
AGAAAGAGTTTATTAGTTTTGTGAAAAACTACAAGAATCCAAATCTGACCATTTCTTTCACTGCTGAGCG
AAGCATCGAAGATGAGCTCAATCGGGAAAGTAACAGTGACGTGTTCACCGTCATCATCAGCTACGTCGTG
ATGTTTCTGTACATTTCCCTCGCCCTGGGTCACATCCAGAGCTGCAGCAGGCTCCTGGTGGATTCTAAGA
TCTCGCTGGGCATTGCGGGGATCCTGATCGTGCTAAGCTCGGTGGCCTGCTCTCTGGGCATCTTCAGCTA
CATGGGGATGCCGCTGACCCTCATCGTCATTGAGGTCATCCCATTCCTGGTGCTGGCTGTCGGGGTGGAC
AACATCTTCATTCTAGTGCAGACCTACCAGAGAGATGAGCGTCTTCAGGAGGAAACGCTGGATCAGCAGC
TGGGCAGGATCCTTGGAGAAGTGGCCCCGACCATGTTCCTTTCATCCTTTTCTGAGACCTCAGCATTTTT
CTTTGGGGCGCTGTCCTCGATGCCAGCTGTGCACACCTTCTCTCTGTTTGCGGGAATGGCCGTCCTCATT
GACTTCCTCCTTCAGATTACCTGCTTTGTGAGCCTGTTGGGGTTAGATATTAAGAGGCAAGAGAAAAACC
ATCTGGACATCCTGTGCTGTGTCAGAGGCGCTGACGACGGACAAGGTAGCCACGCCTCCGAAAGCTACCT
GTTTCGCTTCTTCAAAAACTACTTTGCCCCCCTTCTGCTGAAGGACTGGCTGAGGCCAATTGTGGTAGCG
GTGTTTGTGGGCGTTCTGTCATTCAGTGTTGCGGTGGTGAACAAAGTAGACATCGGGTTGGATCAGTCTC
TCTCAATGCCAAACGATTCGTATGTGATTGACTATTTCAAATCACTCGCTCAGTACCTGCACTCGGGCCC
ACCCGTGTACTTTGTCCTGGAGGAAGGCTATAACTACAGTTCACGCAAAGGGCAGAACATGGTGTGCGGC
GGCATGGGCTGTGACAATGACTCCCTGGTGCAGCAGATATTTAACGCAGCTGAGCTGGACACCTACACCC
GAGTAGGCTTCGCCCCCTCGTCCTGGATCGATGACTACTTTGACTGGGTCTCGCCACAGTCGTCCTGCTG
CAGACTCTACAACGTCACTCACCAGTTCTGCAATGCTTCTGTGATGGACCCAACCTGTGTCCGCTGCAGA
CCTCTGACTCCAGAGGGTAAACAGAGGCCTCAGGGGAAAGAATTCATGAAATTCCTGCCCATGTTCCTTT
CTGATAACCCCAACCCCAAGTGCGGCAAAGGGGGACATGCTGCTTACGGTTCAGCTGTTAACATTGTGGG
AGATGACACTTACATTGGGGCCACTTACTTCATGACCTACCACACCATACTTAAGACCTCCGCTGACTAT
ACTGATGCCATGAAGAAAGCTCGGCTAATAGCCAGTAACATCACGGAAACCATGCGTTCTAAGGGGAGTG
ACTACCGCGTATTCCCTTACAGTGTGTTCTACGTCTTCTATGAACAGTACCTGACCATTATTGATGACAC
CATCTTTAACCTCAGTGTGTCTCTGGGCTCCATATTTCTGGTGACCTTGGTGGTTCTGGGCTGTGAGCTG
TGGTCTGCGGTCATCATGTGTATCACCATAGCCATGATCCTGGTCAACATGTTCGGTGTCATGTGGCTGT
GGGGCATCAGTCTGAATGCGGTCTCCTTGGTCAACTTGGTGATGAGCTGCGGCATTTCTGTGGAGTTCTG
CAGCCATATAACGAGAGCATTCACCATGAGTACCAAAGGAAGCCGAGTGAGCCGGGCGGAAGAGGCACTG
GCCCACATGGGTAGTTCTGTATTCAGTGGAATCACACTTACGAAATTTGGAGGGATCGTGGTGTTAGCCT
TTGCCAAATCTCAAATTTTTGAGATATTTTACTTCAGGATGTACTTAGCCATGGTCTTACTCGGAGCCAC
TCATGGACTAATATTTCTTCCCGTCTTACTCAGTTACATAGGGCCGTCGGTGAATAAAGCTAAAAGACAC
ACCACTTACGAGCGCTACAGAGGGACAGAGAGAGAACGGCTCCTCAATTTTTAG

Translation (1277 aa):
MGAHHPALGLLLLLLCPAQVFSQSCVWYGECGIATGDKRYNCKYSGPPKPLPKDGYDLVQELCPGLFFDN
VSLCCDIQQLQTLKSNLQLPLQFLSRCPSCFYNLMTLFCELTCSPHQSQFLNVTATEDYFDPKTQENKTN
VKELEYFVGQSFANAMYNACRDVEAPSSNEKALGLLCGRDARACNATNWIEYMFNKDNGQAPFTIIPVFS
DLSILGMEPMRNATKGCNESVDEVTGPCSCQDCSIVCGPKPQPPPPPMPWRIWGLDAMYVIMWVTYVAFL
FVFFGALLAVWCHRRRYFVSEYTPIDSNIAFSVNSSDKGEASCCDPLGAAFDDCLRRMFTKWGAFCVRNP
TCIIFFSLAFITVCSSGLVFVQVTTNPVELWSAPHSQARLEKEYFDKHFGPFFRTEQLIIQAPNTSVHIY
EPYPAGADVPFGPPLNKEILHQVLDLQIAIESITASYNNETVTLQDICVAPLSPYNKNCTIMSVLNYFQN
SHAVLDSQVGDDFYIYADYHTHFLYCVRAPASLNDTSLLHGPCLGTFGGPVFPWLVLGGYDDQNYNNATA
LVITFPVNNYYNDTERLQRAWAWEKEFISFVKNYKNPNLTISFTAERSIEDELNRESNSDVFTVIISYVV
MFLYISLALGHIQSCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYMGMPLTLIVIEVIPFLVLAVGVD
NIFILVQTYQRDERLQEETLDQQLGRILGEVAPTMFLSSFSETSAFFFGALSSMPAVHTFSLFAGMAVLI
DFLLQITCFVSLLGLDIKRQEKNHLDILCCVRGADDGQGSHASESYLFRFFKNYFAPLLLKDWLRPIVVA
VFVGVLSFSVAVVNKVDIGLDQSLSMPNDSYVIDYFKSLAQYLHSGPPVYFVLEEGYNYSSRKGQNMVCG
GMGCDNDSLVQQIFNAAELDTYTRVGFAPSSWIDDYFDWVSPQSSCCRLYNVTHQFCNASVMDPTCVRCR
PLTPEGKQRPQGKEFMKFLPMFLSDNPNPKCGKGGHAAYGSAVNIVGDDTYIGATYFMTYHTILKTSADY
TDAMKKARLIASNITETMRSKGSDYRVFPYSVFYVFYEQYLTIIDDTIFNLSVSLGSIFLVTLVVLGCEL
WSAVIMCITIAMILVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTMSTKGSRVSRAEEAL
AHMGSSVFSGITLTKFGGIVVLAFAKSQIFEIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKRH
TTYERYRGTERERLLNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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