NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3578.1 Public Homo sapiens 4 STBD1 24 110 108 CCDS HistoryNCBI Gene:8987Re-query CCDS DB by CCDS ID:3578.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000237642.7 ENSP00000237642.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000237642.7Link to Ensembl Protein Viewer:ENSP00000237642.6Re-query CCDS DB by Nucleotide ID:ENST00000237642Re-query CCDS DB by Protein ID:ENSP00000237642
Original member Current member NCBI NM_003943.5 NP_003934.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003943.5Link to Protein Sequence:NP_003934.1Re-query CCDS DB by Nucleotide ID:NM_003943Re-query CCDS DB by Protein ID:NP_003934Link to BLAST:NP_003934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003934.1 358 O95210 358 100% 0 0

Chromosomal Locations for CCDS 3578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 76306770 76306989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76309144 76310000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGGCGCCGTCTGGTCCGCCCTGCTGGTTGGAGGGGGTCTGGCCGGAGCACTTTTCGTTTGGCTGCTGC
GGGGCGGCCCTGGCGACACCGGGAAGGACGGGGATGCGGAGCAGGAGAAAGACGCCCCTCTTGGGGGAGC
TGCGATTCCGGGAGGCCATCAGAGTGGCAGCAGCGGACTGAGCCCTGGACCTTCCGGGCAGGAGCTGGTC
ACCAAACCAGAGCATCTTCAAGAAAGCAATGGACATTTGATTTCTAAGACCAAAGACCTTGGTAAACTGC
AAGCAGCATCATGGAGATTGCAGAATCCTTCCAGGGAAGTCTGTGACAATTCAAGAGAACATGTTCCTTC
TGGACAGTTTCCAGACACAGAAGCTCCAGCTACCTCTGAGACCAGTAACTCTAGGAGTTACTCTGAAGTT
TCAAGAAATGAAAGCCTTGAATCTCCTATGGGAGAATGGGGATTCCAAAAAGGACAAGAGATATCTGCTA
AAGCAGCTACATGTTTTGCAGAGAAGTTGCCTTCTAGCAACCTGCTCAAGAACAGAGCTAAAGAAGAAAT
GAGCCTCTCTGATTTGAACAGTCAGGACCGGGTTGACCACGAGGAGTGGGAAATGGTGCCTAGGCACTCA
TCTTGGGGGGATGTTGGTGTGGGTGGCAGTCTTAAGGCTCCAGTGTTAAACCTAAACCAGGGAATGGACA
ATGGAAGAAGCACTTTGGTGGAAGCAAGAGGTCAGCAAGTGCATGGGAAAATGGAAAGGGTAGCAGTGAT
GCCTGCAGGGTCTCAGCAAGTTAGTGTCAGGTTCCAGGTCCATTATGTCACAAGCACTGATGTGCAATTC
ATTGCAGTAACTGGAGACCATGAGTGTCTTGGGAGATGGAACACTTACATCCCACTCCACTATAACAAGG
ATGGGTTCTGGTCTCATTCCATTTTCCTGCCTGCAGATACAGTGGTGGAGTGGAAGTTTGTGTTGGTAGA
GAATGGGGGAGTTACCCGCTGGGAAGAATGCAGCAATAGATTCCTAGAAACTGGCCATGAGGATAAAGTG
GTTCACGCATGGTGGGGGATTCACTGA

Translation (358 aa):
MGAVWSALLVGGGLAGALFVWLLRGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQELV
TKPEHLQESNGHLISKTKDLGKLQAASWRLQNPSREVCDNSREHVPSGQFPDTEAPATSETSNSRSYSEV
SRNESLESPMGEWGFQKGQEISAKAATCFAEKLPSSNLLKNRAKEEMSLSDLNSQDRVDHEEWEMVPRHS
SWGDVGVGGSLKAPVLNLNQGMDNGRSTLVEARGQQVHGKMERVAVMPAGSQQVSVRFQVHYVTSTDVQF
IAVTGDHECLGRWNTYIPLHYNKDGFWSHSIFLPADTVVEWKFVLVENGGVTRWEECSNRFLETGHEDKV
VHAWWGIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH