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Report for CCDS15020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15020.1 Public Mus musculus 1 Map2 23 108 98 CCDS HistoryNCBI Gene:17756Re-query CCDS DB by CCDS ID:15020.1Re-query CCDS DB by GeneID:17756See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114017.7 ENSMUSP00000109650.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114017.7Link to Ensembl Protein Viewer:ENSMUSP00000109650.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114017Re-query CCDS DB by Protein ID:ENSMUSP00000109650
Original member Current member EBI ENSMUST00000114018.9 ENSMUSP00000109651.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114018.9Link to Ensembl Protein Viewer:ENSMUSP00000109651.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114018Re-query CCDS DB by Protein ID:ENSMUSP00000109651
Original member Current member NCBI NM_001039934.1 NP_001035023.1 Accepted alive Link to Nucleotide Sequence:NM_001039934.1Link to Protein Sequence:NP_001035023.1Re-query CCDS DB by Nucleotide ID:NM_001039934Re-query CCDS DB by Protein ID:NP_001035023Link to BLAST:NP_001035023.1

Chromosomal Locations for CCDS 15020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 66380512 66380773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66399389 66399502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66401444 66401521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66420135 66420196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66421646 66421790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66425197 66425528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66431527 66431619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66433514 66433595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66438254 66438366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66438792 66439007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGCCGACGAGCGGAAAGATGAAGGAAAGGCACCACACTGGACATCAGCCTCACTCACAGAGGCAGCTG
CACACCCTCACTCTCCAGAGATGAAGGACCAGGGTGGGGCAGGGGAAGGGCTGAGCCGCAACGCCAATGG
ATTTCCATACAGAGAGGAGGAGGAAGGCGCCTTTGGGGAGCACAGGTCACAGGGCACCTATTCAGATACC
AAAGAGAACGGGATCAACGGAGAGCTGACCTCAGCTGACAGAGAAACAGCAGAGGAGGTATCTGCAAGGA
TAGTTCAAGTAGTCACAGCTGAAGCTGTAGCAGTCCTGAAAGGTGAACAAGAGAAGGAAGCCCAACACAA
GGACCAGCCTGCAGCTCTGCCTCTAGCAGCCGAAGAAACAGCTAATCTGCCACCTTCGCCACCACCATCG
CCAGCCTCAGAACAAACAGCCACAGTGGAGGAAGCAGCAAGTGGTGACTTGGCTCAGGCTCCTGGTGCTT
TTAAACAGGCGAAGGATAAAGTCACTGATGGAATAAGCAAGAGCCCAGAGAAACGTTCTTCCCTCCCAAG
ACCTTCCTCCATCCTCCCTCCTCGCAGGGGTGTATCAGGAGACAGGGAGGAGAACTCTTTCTCTCTGAAT
AGCTCCATCTCTTCAGCACGACGGACCACCAGGTCAGAACCAATTCGCAGAGCAGGAAAAAGTGGCACCT
CCACACCTACTACCCCTGGATCAACTGCAATCACCCCTGGAACTCCCCCAAGCTACTCTTCACGTACCCC
AGGCACCCCGGGAACCCCGAGCTACCCCAGGACACCAGGAACCCCCAAATCTGGCATCCTGGTGCCCAGT
GAGAAGAAAGTTGCCATCATCCGCACTCCTCCAAAGTCCCCAGCTACTCCTAAGCAGCTTCGGCTTATTA
ACCAACCACTGCCGGACCTGAAGAATGTCAAGTCCAAAATCGGATCAACTGACAACATCAAATACCAGCC
TAAGGGGGGTCAGGTTAGGATTTTAAACAAGAAGATCGATTTTAGCAAAGTTCAGTCAAGATGTGGTTCC
AAGGATAACATCAAACATTCTGCTGGGGGCGGAAATGTACAAATTGTTACTAAGAAGATAGACTTAAGCC
ATGTGACATCCAAATGTGGCTCTCTAAAGAACATCCGTCACAGGCCAGGTGGTGGACGTGTGAAAATTGA
GAGTGTAAAACTGGATTTCAAGGAAAAGGCCCAAGCTAAAGTTGGCTCACTTGACAATGCTCACCACGTA
CCTGGAGGTGGTAATGTGAAGATTGACAGCCAAAAGTTGAACTTCAGAGAGCATGCAAAGGCCCGGGTAG
ATCACGGGGCTGAGATCATCACACAGTCCCCAAGCAGGTCCAGCGTGGCATCACCCCGACGACTCAGCAA
CGTCTCATCTTCTGGAAGCATCAACCTGCTCGAATCCCCTCAGCTTGCCACTTTGGCTGAGGATGTCACT
GCGGCGCTTGCTAAGCAGGGCTTGTGA

Translation (498 aa):
MADERKDEGKAPHWTSASLTEAAAHPHSPEMKDQGGAGEGLSRNANGFPYREEEEGAFGEHRSQGTYSDT
KENGINGELTSADRETAEEVSARIVQVVTAEAVAVLKGEQEKEAQHKDQPAALPLAAEETANLPPSPPPS
PASEQTATVEEAASGDLAQAPGAFKQAKDKVTDGISKSPEKRSSLPRPSSILPPRRGVSGDREENSFSLN
SSISSARRTTRSEPIRRAGKSGTSTPTTPGSTAITPGTPPSYSSRTPGTPGTPSYPRTPGTPKSGILVPS
EKKVAIIRTPPKSPATPKQLRLINQPLPDLKNVKSKIGSTDNIKYQPKGGQVRILNKKIDFSKVQSRCGS
KDNIKHSAGGGNVQIVTKKIDLSHVTSKCGSLKNIRHRPGGGRVKIESVKLDFKEKAQAKVGSLDNAHHV
PGGGNVKIDSQKLNFREHAKARVDHGAEIITQSPSRSSVASPRRLSNVSSSGSINLLESPQLATLAEDVT
AALAKQGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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