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Report for CCDS7545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7545.1 Public Homo sapiens 10 INA 24 110 108 CCDS HistoryNCBI Gene:9118Re-query CCDS DB by CCDS ID:7545.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7545.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369849.9 ENSP00000358865.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369849.9Link to Ensembl Protein Viewer:ENSP00000358865.4Re-query CCDS DB by Nucleotide ID:ENST00000369849Re-query CCDS DB by Protein ID:ENSP00000358865
Original member Current member NCBI NM_032727.4 NP_116116.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032727.4Link to Protein Sequence:NP_116116.1Re-query CCDS DB by Nucleotide ID:NM_032727Re-query CCDS DB by Protein ID:NP_116116Link to BLAST:NP_116116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116116.1 499 Q16352 499 100% 0 0

Chromosomal Locations for CCDS 7545.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 103277212 103278276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103287035 103287159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103288360 103288669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGAGCTTCGGCTCGGAGCACTACCTGTGCTCCTCCTCCTCCTACCGCAAGGTGTTCGGGGATGGCTCTC
GCCTGTCCGCCCGCCTCTCTGGGGCCGGCGGCGCGGGCGGCTTCCGCTCGCAGTCGCTGTCCCGCAGCAA
TGTGGCCTCCTCGGCCGCCTGCTCCTCGGCCTCGTCGCTCGGCCTCGGCCTGGCCTATCGCCGGCCGCCG
GCGTCCGACGGGCTGGACCTGAGCCAGGCGGCGGCGCGCACCAACGAGTACAAGATCATCCGCACCAACG
AGAAGGAGCAGCTGCAGGGCCTCAACGACCGCTTCGCCGTGTTCATCGAGAAGGTGCATCAGCTGGAGAC
GCAGAACCGCGCGTTGGAGGCCGAGCTGGCCGCGCTGCGACAGCGCCACGCTGAGCCGTCGCGCGTCGGC
GAGCTCTTCCAGCGCGAGCTGCGCGACCTGCGCGCGCAGCTGGAGGAGGCCAGCTCGGCTCGCTCGCAGG
CCCTGCTGGAGCGCGACGGGCTGGCGGAGGAGGTGCAGCGGCTGCGGGCGCGCTGCGAGGAGGAGAGCCG
CGGACGCGAAGGCGCCGAGCGCGCCCTGAAGGCGCAGCAGCGCGACGTGGACGGCGCCACGCTGGCCCGC
CTGGACCTGGAGAAGAAGGTGGAGTCGCTGCTGGACGAGCTGGCCTTCGTACGCCAGGTGCACGACGAGG
AGGTAGCCGAGCTGCTGGCCACGCTGCAGGCGTCGTCGCAGGCCGCGGCCGAGGTGGACGTGACTGTGGC
TAAACCAGACCTGACCTCGGCTCTGAGGGAGATCCGCGCCCAGTATGAGTCCCTGGCCGCTAAGAACCTG
CAGTCCGCGGAAGAATGGTACAAGTCCAAGTTTGCCAACCTGAACGAGCAGGCGGCGCGCAGCACCGAGG
CCATCCGGGCCAGCCGCGAGGAGATCCACGAGTATCGGCGCCAGCTGCAGGCGCGCACCATCGAGATCGA
GGGCCTGCGCGGGGCCAACGAGTCCTTGGAGAGGCAGATCCTGGAGCTGGAGGAGCGGCACAGTGCCGAG
GTAGCTGGCTACCAGGATAGCATTGGGCAGCTGGAGAATGATCTGAGGAACACCAAGAGTGAGATGGCAC
GCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCTCTTGACATTGAGATAGCAGCTTACAG
GAAACTGCTGGAAGGCGAGGAGACACGTTTTAGCACCAGTGGGTTAAGCATTTCGGGGCTGAATCCACTT
CCCAATCCAAGTTACCTGCTCCCACCTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCACTGGGC
TATCACTTAAGAAAGAGGAGGAGGAGGAGGAGGCATCTAAGGTAGCCTCTAAGAAAACCTCCCAGATAGG
GGAAAGTTTTGAAGAAATATTAGAGGAGACAGTAATATCTACTAAGAAAACCGAGAAATCAAATATAGAA
GAAACCACCATTTCAAGCCAAAAAATATAA

Translation (499 aa):
MSFGSEHYLCSSSSYRKVFGDGSRLSARLSGAGGAGGFRSQSLSRSNVASSAACSSASSLGLGLAYRRPP
ASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVG
ELFQRELRDLRAQLEEASSARSQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLAR
LDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVTVAKPDLTSALREIRAQYESLAAKNL
QSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAE
VAGYQDSIGQLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLNPL
PNPSYLLPPRILSATTSKVSSTGLSLKKEEEEEEASKVASKKTSQIGESFEEILEETVISTKKTEKSNIE
ETTISSQKI


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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