NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11675.1 Public Homo sapiens 17 SLC16A6 24 110 108 CCDS HistoryNCBI Gene:9120Re-query CCDS DB by CCDS ID:11675.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11675.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327268.8 ENSP00000319991.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000327268.8Link to Ensembl Protein Viewer:ENSP00000319991.4Re-query CCDS DB by Nucleotide ID:ENST00000327268Re-query CCDS DB by Protein ID:ENSP00000319991
Original member Current member EBI ENST00000580666.6 ENSP00000462985.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000580666.6Link to Ensembl Protein Viewer:ENSP00000462985.1Re-query CCDS DB by Nucleotide ID:ENST00000580666Re-query CCDS DB by Protein ID:ENSP00000462985
Original member Current member NCBI NM_001174166.2 NP_001167637.1 Accepted alive Link to Nucleotide Sequence:NM_001174166.2Link to Protein Sequence:NP_001167637.1Re-query CCDS DB by Nucleotide ID:NM_001174166Re-query CCDS DB by Protein ID:NP_001167637Link to BLAST:NP_001167637.1
Original member Current member NCBI NM_004694.5 NP_004685.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004694.5Link to Protein Sequence:NP_004685.2Re-query CCDS DB by Nucleotide ID:NM_004694Re-query CCDS DB by Protein ID:NP_004685Link to BLAST:NP_004685.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167637.1 523 O15403 523 100% 0 0
NP_004685.2 523 O15403 523 100% 0 0

Chromosomal Locations for CCDS 11675.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 68269096 68269346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68270839 68271654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68272639 68272767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68273927 68274070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68278089 68278320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGACCCAAAATAAATTAAAGCTTTGTTCCAAAGCCAATGTGTATACTGAAGTGCCTGATGGAGGATGGG
GCTGGGCGGTAGCTGTTTCATTTTTCTTCGTTGAAGTCTTCACCTACGGCATCATCAAGACATTTGGTGT
CTTCTTTAATGACTTAATGGACAGTTTTAATGAATCCAATAGCAGGATCTCATGGATAATCTCAATCTGT
GTGTTTGTCTTAACATTTTCAGCTCCCCTCGCCACAGTCCTGAGCAATCGTTTCGGACACCGTCTGGTAG
TGATGTTGGGGGGGCTACTTGTCAGCACCGGGATGGTGGCCGCCTCCTTCTCACAAGAGGTTTCTCATAT
GTACGTCGCCATCGGCATCATCTCTGGTCTGGGATACTGCTTTAGTTTTCTCCCAACTGTAACCATCCTA
TCACAATATTTTGGCAAAAGACGTTCCATAGTCACTGCAGTTGCTTCCACAGGAGAATGTTTCGCTGTGT
TTGCTTTCGCACCAGCAATCATGGCTCTGAAGGAGCGCATTGGCTGGAGATACAGCCTCCTCTTCGTGGG
CCTACTACAGTTAAACATTGTCATCTTCGGAGCACTGCTCAGACCCATCTTTATCAGAGGACCAGCGTCA
CCGAAAATAGTCATCCAGGAAAATCGGAAAGAAGCGCAGTATATGCTTGAAAATGAGAAAACACGAACCT
CAATAGACTCCATTGACTCAGGAGTAGAACTAACTACCTCACCTAAAAATGTGCCTACTCACACTAACCT
GGAACTGGAGCCGAAGGCCGACATGCAGCAGGTCCTGGTGAAGACCAGCCCCAGGCCAAGCGAAAAGAAA
GCCCCGCTATTAGACTTCTCCATTTTGAAAGAGAAAAGTTTTATTTGTTATGCATTATTTGGTCTCTTTG
CAACACTGGGATTCTTTGCACCTTCCTTGTACATCATTCCTCTGGGCATTAGTCTGGGCATTGACCAGGA
CCGCGCTGCTTTTTTATTATCTACGATGGCCATTGCAGAAGTTTTCGGAAGGATCGGAGCTGGTTTTGTC
CTCAACAGGGAGCCCATTCGTAAGATTTACATTGAGCTCATCTGCGTCATCTTATTGACTGTGTCTCTGT
TTGCCTTTACTTTTGCTACTGAATTCTGGGGTCTAATGTCATGCAGCATATTTTTTGGGTTTATGGTTGG
AACAATAGGAGGGACTCACATTCCACTGCTTGCTGAGGATGATGTCGTGGGCATTGAGAAGATGTCTTCT
GCAGCTGGGGTCTACATCTTCATTCAGAGCATAGCAGGACTGGCTGGACCGCCCCTTGCAGGTTTGTTGG
TGGACCAAAGTAAGATCTACAGCAGGGCCTTCTACTCCTGCGCAGCTGGCATGGCCCTGGCTGCTGTGTG
CCTCGCCCTGGTGAGACCGTGTAAGATGGGACTGTGCCAGCATCATCACTCAGGTGAAACAAAGGTAGTG
AGCCATCGTGGGAAGACTTTACAGGACATACCTGAAGACTTTCTGGAAATGGATCTTGCAAAAAATGAGC
ACAGAGTTCACGTGCAAATGGAGCCGGTATGA

Translation (523 aa):
MTQNKLKLCSKANVYTEVPDGGWGWAVAVSFFFVEVFTYGIIKTFGVFFNDLMDSFNESNSRISWIISIC
VFVLTFSAPLATVLSNRFGHRLVVMLGGLLVSTGMVAASFSQEVSHMYVAIGIISGLGYCFSFLPTVTIL
SQYFGKRRSIVTAVASTGECFAVFAFAPAIMALKERIGWRYSLLFVGLLQLNIVIFGALLRPIFIRGPAS
PKIVIQENRKEAQYMLENEKTRTSIDSIDSGVELTTSPKNVPTHTNLELEPKADMQQVLVKTSPRPSEKK
APLLDFSILKEKSFICYALFGLFATLGFFAPSLYIIPLGISLGIDQDRAAFLLSTMAIAEVFGRIGAGFV
LNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMSCSIFFGFMVGTIGGTHIPLLAEDDVVGIEKMSS
AAGVYIFIQSIAGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKMGLCQHHHSGETKVV
SHRGKTLQDIPEDFLEMDLAKNEHRVHVQMEPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH