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Report for CCDS11961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11961.1 Public Homo sapiens 18 TXNL1 24 110 108 CCDS HistoryNCBI Gene:9352Re-query CCDS DB by CCDS ID:11961.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11961.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217515.11 ENSP00000217515.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217515.11Link to Ensembl Protein Viewer:ENSP00000217515.5Re-query CCDS DB by Nucleotide ID:ENST00000217515Re-query CCDS DB by Protein ID:ENSP00000217515
Original member Current member EBI ENST00000590954.5 ENSP00000464918.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000590954.5Link to Ensembl Protein Viewer:ENSP00000464918.1Re-query CCDS DB by Nucleotide ID:ENST00000590954Re-query CCDS DB by Protein ID:ENSP00000464918
Original member Current member NCBI NM_004786.3 NP_004777.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004786.3Link to Protein Sequence:NP_004777.1Re-query CCDS DB by Nucleotide ID:NM_004786Re-query CCDS DB by Protein ID:NP_004777Link to BLAST:NP_004777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004777.1 289 O43396 289 100% 0 0

Chromosomal Locations for CCDS 11961.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 56603027 56603056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56610993 56611097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56614424 56614596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56616245 56616314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56618004 56618126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56624288 56624461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56626361 56626457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56638343 56638440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGTGGGGGTGAAGCCCGTCGGGAGCGACCCGGATTTCCAGCCAGAGCTGAGCGGCGCGGGCTCCAGAC
TCGCCGTGGTCAAGTTCACCATGAGAGGGTGTGGGCCATGTTTGAGGATTGCCCCAGCATTCAGTTCTAT
GAGTAATAAATATCCACAGGCTGTTTTCTTGGAAGTCGATGTACATCAGTGTCAGGGAACAGCTGCCACC
AACAATATATCAGCAACACCTACATTTTTGTTTTTTCGAAACAAAGTGAGAATTGATCAATATCAAGGAG
CAGATGCTGTGGGATTAGAAGAAAAAATCAAGCAGCACTTAGAAAATGACCCTGGAAGCAATGAGGACAC
AGATATTCCAAAAGGCTATATGGATTTAATGCCTTTTATTAACAAAGCTGGTTGTGAATGTCTTAATGAA
AGTGATGAGCATGGATTTGACAACTGTTTACGAAAAGACACAACCTTCTTGGAATCTGACTGTGATGAAC
AGCTGCTTATTACTGTGGCATTCAATCAACCTGTTAAGCTTTATTCCATGAAATTTCAAGGGCCAGATAA
TGGTCAGGGCCCTAAATATGTAAAAATTTTTATCAACCTACCCCGATCTATGGATTTTGAAGAGGCAGAA
AGAAGTGAACCAACTCAAGCTCTGGAACTGACAGAGGATGATATTAAAGAAGATGGCATTGTTCCACTTC
GTTATGTTAAGTTTCAGAATGTTAACAGTGTAACTATATTTGTTCAGTCGAATCAAGGTGAAGAGGAAAC
AACAAGAATTTCATATTTTACTTTTATTGGTACTCCAGTCCAGGCAACAAATATGAATGACTTCAAACGA
GTAGTTGGCAAAAAAGGAGAAAGCCACTAA

Translation (289 aa):
MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAAT
NNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNE
SDEHGFDNCLRKDTTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAE
RSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKR
VVGKKGESH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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