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Report for CCDS9493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9493.1 Public Homo sapiens 13 TM9SF2 24 110 108 CCDS HistoryNCBI Gene:9375Re-query CCDS DB by CCDS ID:9493.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9493.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376387.5 ENSP00000365567.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376387.5Link to Ensembl Protein Viewer:ENSP00000365567.3Re-query CCDS DB by Nucleotide ID:ENST00000376387Re-query CCDS DB by Protein ID:ENSP00000365567
Original member Current member EBI ENST00000642475.1 ENSP00000493515.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642475.1Link to Ensembl Protein Viewer:ENSP00000493515.1Re-query CCDS DB by Nucleotide ID:ENST00000642475Re-query CCDS DB by Protein ID:ENSP00000493515
Original member Current member NCBI NM_004800.3 NP_004791.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004800.3Link to Protein Sequence:NP_004791.1Re-query CCDS DB by Nucleotide ID:NM_004800Re-query CCDS DB by Protein ID:NP_004791Link to BLAST:NP_004791.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004791.1 663 Q99805 663 100% 0 0

Chromosomal Locations for CCDS 9493.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 99501607 99501777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99517614 99517681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99520036 99520129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99529467 99529594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99536608 99536737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99537739 99537863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99539446 99539557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99540714 99540793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99541559 99541667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99543863 99543995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99546985 99547104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99549165 99549222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99552167 99552326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99554304 99554455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99555536 99555647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99559363 99559534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99562691 99562758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGAGCGCGAGGCTGCCGGTGTTGTCTCCACCTCGGTGGCCGCGGCTGTTGCTGCTGTCGCTGCTCCTGC
TGGGGGCGGTTCCTGGCCCGCGCCGGAGCGGCGCTTTCTACCTGCCCGGCCTGGCGCCCGTCAACTTCTG
CGACGAAGAAAAAAAGAGCGACGAGTGCAAGGCCGAAATAGAACTATTTGTGAACAGACTTGATTCAGTG
GAATCAGTTCTTCCTTATGAATACACAGCGTTTGATTTTTGCCAAGCATCAGAAGGAAAGCGCCCATCTG
AAAATCTTGGTCAGGTACTATTCGGGGAAAGAATTGAACCTTCACCATATAAGTTTACGTTTAATAAGAA
GGAGACCTGTAAGCTTGTTTGTACAAAAACATACCATACAGAGAAAGCTGAAGACAAACAAAAGTTAGAA
TTCTTGAAAAAAAGCATGTTATTGAATTATCAACATCACTGGATTGTGGATAATATGCCTGTAACGTGGT
GTTACGATGTTGAAGATGGTCAGAGGTTCTGTAATCCTGGATTTCCTATTGGCTGTTACATTACAGATAA
AGGCCATGCAAAAGATGCCTGTGTTATTAGTTCAGATTTCCATGAAAGAGATACATTTTACATCTTCAAC
CATGTTGACATCAAAATATACTATCATGTTGTTGAAACTGGGTCCATGGGAGCAAGATTAGTGGCTGCTA
AACTTGAACCGAAAAGCTTCAAACATACCCATATAGATAAACCAGACTGCTCAGGGCCCCCCATGGACAT
AAGTAACAAGGCTTCTGGGGAGATAAAAATTGCCTATACTTACTCTGTTAGCTTCGAGGAAGATGATAAG
ATCAGATGGGCGTCTAGATGGGACTATATTCTGGAGTCTATGCCTCATACCCACATTCAGTGGTTTAGCA
TTATGAATTCCCTGGTCATTGTTCTCTTCTTATCTGGAATGGTAGCTATGATTATGTTACGGACACTGCA
CAAAGATATTGCTAGATATAATCAGATGGACTCTACGGAAGATGCCCAGGAAGAATTTGGCTGGAAACTT
GTTCATGGTGATATATTCCGTCCTCCAAGAAAAGGGATGCTGCTATCAGTCTTTCTAGGATCCGGGACAC
AGATTTTAATTATGACCTTTGTGACTCTATTTTTCGCTTGCCTGGGATTTTTGTCACCTGCCAACCGAGG
AGCGCTGATGACGTGTGCTGTGGTCCTGTGGGTGCTGCTGGGCACCCCTGCAGGCTATGTTGCTGCCAGA
TTCTATAAGTCCTTTGGAGGTGAGAAGTGGAAAACAAATGTTTTATTAACATCATTTCTTTGTCCTGGGA
TTGTATTTGCTGACTTCTTTATAATGAATCTGATCCTCTGGGGAGAAGGATCTTCAGCAGCTATTCCTTT
TGGGACACTGGTTGCCATATTGGCCCTTTGGTTCTGCATATCTGTGCCTCTGACGTTTATTGGTGCATAC
TTTGGTTTTAAGAAGAATGCCATTGAACACCCAGTTCGAACCAATCAGATTCCACGTCAGATTCCTGAAC
AGTCGTTCTACACGAAGCCCTTGCCTGGTATTATCATGGGAGGGATTTTGCCCTTTGGCTGCATCTTTAT
ACAACTTTTCTTCATTCTGAATAGTATTTGGTCACACCAGATGTATTACATGTTTGGCTTCCTATTTCTG
GTGTTTATCATTTTGGTTATTACCTGTTCTGAAGCAACTATACTTCTTTGCTATTTCCACCTATGTGCAG
AGGATTATCATTGGCAATGGCGTTCATTCCTTACGAGTGGCTTTACTGCAGTTTATTTCTTAATCTATGC
AGTACACTACTTCTTTTCAAAACTGCAGATCACGGGAACAGCAAGCACAATTCTGTACTTTGGTTATACC
ATGATAATGGTTTTGATCTTCTTTCTTTTTACAGGAACAATTGGCTTCTTTGCATGCTTTTGGTTTGTTA
CCAAAATATACAGTGTGGTGAAGGTTGACTGA

Translation (663 aa):
MSARLPVLSPPRWPRLLLLSLLLLGAVPGPRRSGAFYLPGLAPVNFCDEEKKSDECKAEIELFVNRLDSV
ESVLPYEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYHTEKAEDKQKLE
FLKKSMLLNYQHHWIVDNMPVTWCYDVEDGQRFCNPGFPIGCYITDKGHAKDACVISSDFHERDTFYIFN
HVDIKIYYHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEEDDK
IRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQEEFGWKL
VHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAAR
FYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAY
FGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFL
VFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYT
MIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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