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Report for CCDS20268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20268.1 Public Mus musculus 6 Dqx1 23 108 98 CCDS HistoryNCBI Gene:93838Re-query CCDS DB by CCDS ID:20268.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077502.4 ENSMUSP00000076708.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077502.4Link to Ensembl Protein Viewer:ENSMUSP00000076708.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000077502Re-query CCDS DB by Protein ID:ENSMUSP00000076708
Original member Current member NCBI NM_033606.3 NP_291084.1 Accepted alive Link to Nucleotide Sequence:NM_033606.3Link to Protein Sequence:NP_291084.1Re-query CCDS DB by Nucleotide ID:NM_033606Re-query CCDS DB by Protein ID:NP_291084Link to BLAST:NP_291084.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291084.1 718 Q924H9-1 718 100% 0 0

Chromosomal Locations for CCDS 20268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83058508 83058735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83058917 83059110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83059439 83059826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83060168 83060401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83060491 83060590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83060697 83060855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83060936 83061127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83064524 83064643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83064794 83064984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83066090 83066280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83066433 83066592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGGCCTCTGGGCTGGCAGAAGAGTCTGAACTGAGTCCTGGGGAGTCTGAGCTGGCTGTGAACCCCTTTG
ATGGGCTCCCCTTCTCCTCCTGCTACTATGAGCTGCTTGAGCAGCGTAGAGCCCTGCCCATCTGGGCTGC
TCGCTTCCTGTTCTTGGAGCATTTGGAGAGTAGCCCCACTGGAGTGGTGCTGGTATCTGGGGACCCTGGC
TCTGGCAAGAGCACCCAGATTCCTCAGTGGTGTGCAGAGTTTGCGCTGGCCAGAGGATTCCAGACAGGAC
AGGTTACAGTCACTCAGCCCTACCCTCTGGCAGCCATGAGCCTGGCTTCAAGGGTGGCTGATGAGATGGA
CCTGACCCTGGGTCATGAGATTGGATACAGCATCCCTCAGGAAGACTGTACTGGGCCCAACACCATGCTC
AGGTTTTGCTGGGACAGGCTATTTCTGCAGGAAGTAGCCTCAACCCGGGGCCCTGGAGCCTGGAGTGTGC
TGATACTGGATGAGGCTCAGGAGCGGTCAGTGGCCTCAGATTTACTACAGGGGCTCTTGAGAGATACCAG
ACTGAGAAACCTGCCAGGGGATCCCAGAGTGGTTGTAGTTACCGACCCAGCGCTTGAACCAAAATTCCAG
GCTTTCTGGGGCAATTCTCCCATTGTGCGTGTGCCCAGGGAGCCTGGTGGAGATCCCACCCTTGCCTACA
AGGACACTGTCCCTACCGACCTGGTGGAAGCTGCCTGCCAAGCTGTGCTTGAGCTGTGTCAGCAGGAAGA
GGCACCAGGAGATGTGCTGGTGTATCTGCCCAGCGAAGAGGAAATTTCTCTGTGCTGTGAATCCTTGTCT
GGGGAGATGGGAACGCTGGCTGTCCCAGGGCCTCCACCGCGGGTGCTACCCCTTCACCCTGGCTGTGCTC
AAGCCATCCAGACAGTGTATGAAGACACAGACGTGAGTGTTCGCAAAATCGTAGTCACTCATTGGCTGGC
CGATTTCTCCTTCTCCCTTCCTTCCATCCAACACGTCATTGACTCAGGACTGGAACTTCGTAGTGTTTAC
AATCCTCGGATCCGGGCAGAATCCCAGGTGTTGAGACCAATTAGCAAGTGCCAGGCAGAGGCAAGACTGC
TTCGGGCAAAGGGGTTCCCACCAGGATCCTGCCTCCGCCTGTATTCTAAATCCACCCTAGAACTAGAGGC
TCCCCCACTGCCCCACCCCAAAGTGTGTGAAGAGAATCTGAGCTCTCTGGTGTTGCTACTAATGAGGAAA
CAGATTGCAGAGCCAGGGGAATGCCACTTCCTGGACCGGCCTGCACCAGAAGCACTGATGCGGGCCCTGG
AAGACTTAGACTATCTGGCTGCTCTGAATGATGACGGGGAGCTGTCGGACCTCGGAGTGATCCTGTCGGA
GTTTCCCCTGCCCCCGGAGCTGGCCAAAGCCCTGCTGGCCTCCTGCGAGTTTAACTGTGTGGATGAAATG
CTCACTCTGGCTGCCATGCTCACTGCTGCTCCTGGGTTTACCCGGCCTCCGCTGAGTGCGGGAGAAGCTG
CCTTGCGCCGGGCTCTGGAACACGCAGACGGTGATCACAGCTCTCTGATCCAGGTCTATGAAGCCTTTGT
ACAAAGTGGAGCAGATGAAGCTTGGTGTCAGGCTCGGGGTCTAAACTGGGAGTCATTATGTCAAGCCCGT
AAACTCCGAGCAGAGCTTGTGGAACTCATGCAACGGATTGAGCTTCCTTTGTCCCAGCCAGCCTTTGGCT
CTGAGCAGAATCGCAGAGACCTTCAGAAAGCACTGCTGTCAGGATACTTCCTCAAGGTGGCCCGAGACAC
AGATGGGACAGGAAATTATCTGCTTCTCACCCATAAACACGTAGCCCAGCTGTCTCCATACTGCAGCTAC
CGAAACCGCAGGACTCCAGCCCAGCCACCCACGTGGGTGCTGTACCACAGCTTCTCCATCTCGAAAGACA
ACTGCCTTTGCATTGTCTCTGAGATCCAGCCTGAGATGCTGGTGGAGCTCGCCCCTCCATACTTCCTGAG
TAACTTGCCCCCCAGTGAGAGCAGAGACCTCTTGAACCAGCTGAGAGAAGGAACAGCAGAGCCACCAGCA
GCAGCGACTGAAACTTCCTCTCCCCAGGAGTATGGAGATGGCTGTGTTCTGCAGTGA

Translation (718 aa):
MASGLAEESELSPGESELAVNPFDGLPFSSCYYELLEQRRALPIWAARFLFLEHLESSPTGVVLVSGDPG
SGKSTQIPQWCAEFALARGFQTGQVTVTQPYPLAAMSLASRVADEMDLTLGHEIGYSIPQEDCTGPNTML
RFCWDRLFLQEVASTRGPGAWSVLILDEAQERSVASDLLQGLLRDTRLRNLPGDPRVVVVTDPALEPKFQ
AFWGNSPIVRVPREPGGDPTLAYKDTVPTDLVEAACQAVLELCQQEEAPGDVLVYLPSEEEISLCCESLS
GEMGTLAVPGPPPRVLPLHPGCAQAIQTVYEDTDVSVRKIVVTHWLADFSFSLPSIQHVIDSGLELRSVY
NPRIRAESQVLRPISKCQAEARLLRAKGFPPGSCLRLYSKSTLELEAPPLPHPKVCEENLSSLVLLLMRK
QIAEPGECHFLDRPAPEALMRALEDLDYLAALNDDGELSDLGVILSEFPLPPELAKALLASCEFNCVDEM
LTLAAMLTAAPGFTRPPLSAGEAALRRALEHADGDHSSLIQVYEAFVQSGADEAWCQARGLNWESLCQAR
KLRAELVELMQRIELPLSQPAFGSEQNRRDLQKALLSGYFLKVARDTDGTGNYLLLTHKHVAQLSPYCSY
RNRRTPAQPPTWVLYHSFSISKDNCLCIVSEIQPEMLVELAPPYFLSNLPPSESRDLLNQLREGTAEPPA
AATETSSPQEYGDGCVLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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