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Report for CCDS15505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15505.1 Public Mus musculus 1 Vangl2 23 108 98 CCDS HistoryNCBI Gene:93840Re-query CCDS DB by CCDS ID:15505.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027837.12 ENSMUSP00000027837.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027837.12Link to Ensembl Protein Viewer:ENSMUSP00000027837.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027837Re-query CCDS DB by Protein ID:ENSMUSP00000027837
Original member Current member EBI ENSMUST00000111263.8 ENSMUSP00000106894.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111263.8Link to Ensembl Protein Viewer:ENSMUSP00000106894.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111263Re-query CCDS DB by Protein ID:ENSMUSP00000106894
Original member Current member NCBI NM_033509.4 NP_277044.1 Accepted alive Link to Nucleotide Sequence:NM_033509.4Link to Protein Sequence:NP_277044.1Re-query CCDS DB by Nucleotide ID:NM_033509Re-query CCDS DB by Protein ID:NP_277044Link to BLAST:NP_277044.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_277044.1 521 Q91ZD4 521 100% 0 0

Chromosomal Locations for CCDS 15505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172004602 172004862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172006090 172006321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172007911 172008046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172008507 172008643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172009441 172010048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172012828 172012948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172013083 172013153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGACACCGAGTCCCAGTACTCGGGCTATTCCTACAAGTCGGGCCACTCCCGCAGCTCCCGGAAGCACA
GGGACCGCCGGGACCGACACCGCTCTAAGAGCCGGGATGGGAGTCGTGGAGATAAATCAGTGACGATCCA
GGCTCCGGGAGAACCCCTGCTGGACAATGAGTCCACGAGGGGGGATGAGCGGGATGACAACTGGGGAGAA
ACAACAACGGTGGTCACGGGCACTTCTGAGCACAGTATCTCCCATGATGACCTCACGCGCATCGCCAAGG
ACATGGAGGACAGTGTCCCGTTGGATTGTTCCCGCCACCTGGGCGTGGCGGCAGGGGCCATTCTGGCGCT
GCTCTCGTTCCTCACCCCGCTGGCTTTCCTGCTGCTGCCTCCACTGCTGTGGCGGGAGGAGCTGGAGCCG
TGTGGGACGGCCTGTGAGGGCCTCTTCATCTCCGTGGCCTTCAAGCTGCTCATCCTGCTGTTGGGCAGCT
GGGCTCTGTTCTTCCGCCGGCCCAAGGCCTCACTGCCCCGAGTCTTCGTGTTACGAGCTCTGCTCATGGT
GCTTGTCTTCCTGCTGGTTATTTCCTATTGGCTCTTCTACGGTGTGCGCATCTTGGACGCCCGGGAGCGG
AGCTACCAGGGCGTGGTTCAGTTTGCCGTTTCTCTAGTGGATGCTTTACTCTTCGTGCACTATCTGGCCG
TAGTTCTGCTGGAGCTCCGTCAGCTCCAGCCCCAGTTCACACTCAAGGTCGTGCGATCCACAGATGGGGC
CAGCCGCTTCTACAATGTCGGCCATCTCAGCATCCAGCGAGTGGCAGTGTGGATCCTGGAGAAGTATTAC
CATGACTTCCCTGTCTACAACCCCGCCCTCCTCAACCTGCCCAAGTCCGTCCTGGCCAAGAAAGTGTCTG
GCTTCAAGGTGTATTCTCTCGGAGAGGAAAATAGCACCAATAACTCCACGGGCCAATCAAGGGCTGTGAT
CGCGGCTGCGGCACGGAGGCGCGACAACAGCCACAATGAGTACTACTACGAGGAAGCCGAGCATGAGCGC
AGAGTGCGCAAGCGCAGGGCCAGGCTCGTGGTGGCTGTGGAGGAGGCCTTCACGCACATTAAGCGGCTGC
AGGAAGAGGAGCAGAAGAACCCCAGGGAGGTGATGGACCCCCGGGAAGCAGCCCAAGCGATCTTTGCATC
CATGGCTCGTGCCATGCAGAAGTACCTTCGCACCACCAAACAGCAGCCTTACCATACCATGGAGAGCATC
CTTCAGCACCTGGAGTTCTGCATTACCCACGACATGACGCCCAAGGCCTTCCTGGAGCGATATTTGGCTG
CTGGACCCACCATCCAGTACCACAAGGAACGTTGGCTGGCCAAACAGTGGACCTTGGTGAGCGAGGAGCC
GGTGACCAATGGGCTTAAGGATGGCATCGTGTTCCTCTTGAAGCGCCAGGACTTCAGCTTGGTAGTGAGC
ACCAAGAAGGTGCCCTTCTTCAAACTCTCTGAGGAATTTGTGGATCCCAAGTCACATAAGTTCGTCATGC
GGCTGCAGTCGGAGACCTCTGTGTGA

Translation (521 aa):
MDTESQYSGYSYKSGHSRSSRKHRDRRDRHRSKSRDGSRGDKSVTIQAPGEPLLDNESTRGDERDDNWGE
TTTVVTGTSEHSISHDDLTRIAKDMEDSVPLDCSRHLGVAAGAILALLSFLTPLAFLLLPPLLWREELEP
CGTACEGLFISVAFKLLILLLGSWALFFRRPKASLPRVFVLRALLMVLVFLLVISYWLFYGVRILDARER
SYQGVVQFAVSLVDALLFVHYLAVVLLELRQLQPQFTLKVVRSTDGASRFYNVGHLSIQRVAVWILEKYY
HDFPVYNPALLNLPKSVLAKKVSGFKVYSLGEENSTNNSTGQSRAVIAAAARRRDNSHNEYYYEEAEHER
RVRKRRARLVVAVEEAFTHIKRLQEEEQKNPREVMDPREAAQAIFASMARAMQKYLRTTKQQPYHTMESI
LQHLEFCITHDMTPKAFLERYLAAGPTIQYHKERWLAKQWTLVSEEPVTNGLKDGIVFLLKRQDFSLVVS
TKKVPFFKLSEEFVDPKSHKFVMRLQSETSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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