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Report for CCDS17235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17235.1 Public Mus musculus 3 Pag1 23 108 98 CCDS HistoryNCBI Gene:94212Re-query CCDS DB by CCDS ID:17235.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108384.8 ENSMUSP00000104021.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108384.8Link to Ensembl Protein Viewer:ENSMUSP00000104021.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108384Re-query CCDS DB by Protein ID:ENSMUSP00000104021
Original member Current member EBI ENSMUST00000161949.7 ENSMUSP00000124529.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161949.7Link to Ensembl Protein Viewer:ENSMUSP00000124529.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161949Re-query CCDS DB by Protein ID:ENSMUSP00000124529
Original member Current member NCBI NM_001195031.1 NP_001181960.1 Accepted alive Link to Nucleotide Sequence:NM_001195031.1Link to Protein Sequence:NP_001181960.1Re-query CCDS DB by Nucleotide ID:NM_001195031Re-query CCDS DB by Protein ID:NP_001181960Link to BLAST:NP_001181960.1
Original member Current member NCBI NM_053182.5 NP_444412.2 Accepted alive Link to Nucleotide Sequence:NM_053182.5Link to Protein Sequence:NP_444412.2Re-query CCDS DB by Nucleotide ID:NM_053182Re-query CCDS DB by Protein ID:NP_444412Link to BLAST:NP_444412.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001181960.1 429 Q3U1F9 429 100% 0 0
NP_444412.2 429 Q3U1F9 429 100% 0 0

Chromosomal Locations for CCDS 17235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9693767 9694129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9696119 9696178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9699225 9699811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9701958 9702054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9704704 9704755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9706083 9706213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGGCCCTGCAGGAAGCGTACTGAGCAGTGGGCAGATGCAGATGCAGATGGTCCTGTGGGGAAGTCTGG
CTGCCGTGGCCATGTTCTTCCTCATCACCTTCCTCGTCCTCCTGTGTTCCACTTGCGACAGAGAGAAGAA
GCCACGGCAGCATAGCGGGGACCATGAGAACCTGATGAATGTGCCTTCCGACAAGGACATGTTCAGCCAT
TCGGCAACCAGCCTGACAACAGATGCACTGGCTAGCAGCGAACAGAACGGGGTGCTCACCAATGGCGACA
TTCTTTCAGAAGACAGCACGCTGACCTGCATGCAGCACTATGAGGAAGTCCAGACCTCGGCTTCCGATCT
CCTGGACTCCCAGGACAGCACAGGAAAGGCCAAGTGCCACCAGAGCCGGGAGCTGCCCAGGATCCCGCCT
GAGAACGCCGTGGACGAGATTCTCACAGCCAGGGCTGCAGACACGGAACTGGGGCCCGGAGTGGAGGGGC
CCTACGAGGTGCTCAAGGACAGCTCCTCCCAGGAGAACATGGTGGAGGACTGTCTGTATGAAACAGTGAA
GGAGATCAAGGAAGTGGCAGACAAAGGCCAGGGTGGCAAGTCCAAGTCCACTTCTGCCTTGAAGGAGCTT
CAGGGGGCTCCCATGGAGGGCAAGGCCGACTTTGCTGAATATGCCTCTGTGGACAGAAACAAAAAGTGCC
GCCACAGCGCGAACGCAGAGAGCATTCTGGGAACTTGCAGTGACCTGGACGAGGAAAGCCCACCTCCTGT
CCCGGTTAAGCTTCTGGATGAGAATGCCAACCTTCCCCAGGAGGGAGGAGGACAGGCAGAGGAGCAAGCT
GCAGAAGGGACCGGTGGACACAGCAAGAGATTTAGTTCCTTGTCATACAAGTCTCGGGAAGAAGACCCGA
CTCTTACAGAAGAGGAGATCTCAGCAATGTATTCCTCAGTGAATAAGCCTGGCCAGTCGGCACACAAACC
TGGACCATGTATGAAAGGGCCAGAATCTGCCTGCCACTCCATGAAGGGCCTCCCTCAGAGGTCGTCATCT
TCCTGCAATGACCTCTATGCCACTGTGAAAGACTTTGAGAAAACTCCCAACAGCATCAGCACACTGCCCC
CGGCAAGGAGACCCAGTGAGGAGCCAGAGCCTGACTATGAAGCCATACAGACTCTAAACAGAGAGGATGA
GAAGGTCCCTCTGGAGACCAATGGCCACCATGTCCCCAAGGAGAGTGACTACGAGAGCATTGGGGACTTG
CAGCAATGCAGAGATGTCACCAGGCTCTAG

Translation (429 aa):
MGPAGSVLSSGQMQMQMVLWGSLAAVAMFFLITFLVLLCSTCDREKKPRQHSGDHENLMNVPSDKDMFSH
SATSLTTDALASSEQNGVLTNGDILSEDSTLTCMQHYEEVQTSASDLLDSQDSTGKAKCHQSRELPRIPP
ENAVDEILTARAADTELGPGVEGPYEVLKDSSSQENMVEDCLYETVKEIKEVADKGQGGKSKSTSALKEL
QGAPMEGKADFAEYASVDRNKKCRHSANAESILGTCSDLDEESPPPVPVKLLDENANLPQEGGGQAEEQA
AEGTGGHSKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPGQSAHKPGPCMKGPESACHSMKGLPQRSSS
SCNDLYATVKDFEKTPNSISTLPPARRPSEEPEPDYEAIQTLNREDEKVPLETNGHHVPKESDYESIGDL
QQCRDVTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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