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Report for CCDS3129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3129.1 Public Homo sapiens 3 CHST2 24 110 108 CCDS HistoryNCBI Gene:9435Re-query CCDS DB by CCDS ID:3129.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3129.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309575.5 ENSP00000307911.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309575.5Link to Ensembl Protein Viewer:ENSP00000307911.3Re-query CCDS DB by Nucleotide ID:ENST00000309575Re-query CCDS DB by Protein ID:ENSP00000307911
Original member Current member NCBI NM_004267.5 NP_004258.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004267.5Link to Protein Sequence:NP_004258.2Re-query CCDS DB by Nucleotide ID:NM_004267Re-query CCDS DB by Protein ID:NP_004258Link to BLAST:NP_004258.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004258.2 530 Q9Y4C5-1 530 100% 0 0

Chromosomal Locations for CCDS 3129.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 143120817 143122409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGAGCCGCAGCCCGCAGCGAGCTCTGCCCCCGGGCGCGCTCCCTCGGCTGCTCCAGGCTGCGCCTGCAG
CCGCGCCGCGTGCCCTGCTCCCGCAGTGGCCCCGGCGCCCAGGACGCCGCTGGCCCGCGTCCCCTCTCGG
AATGAAGGTGTTCCGTAGGAAGGCGCTGGTGTTGTGCGCGGGCTATGCACTGCTGCTGGTGCTCACTATG
CTCAACCTCCTGGACTACAAGTGGCACAAGGAGCCGCTGCAGCAGTGCAACCCCGATGGGCCGCTGGGTG
CCGCAGCGGGGGCAGCCGGAGGCAGCTGGGGGCGCCCAGGGCCGCCTCCGGCCGGGCCGCCCCGTGCTCA
TGCCCGTTTGGACCTCCGCACTCCTTACCGCCCTCCCGCTGCCGCCGTCGGGGCGGCTCCTGCAGCCGCG
GCAGGGATGGCGGGGGTTGCGGCCCCTCCAGGCAATGGCACTCGGGGCACCGGGGGCGTCGGGGACAAGC
GGCAGCTGGTGTACGTGTTCACCACGTGGCGCTCTGGCTCGTCGTTCTTCGGCGAGCTATTCAACCAGAA
TCCCGAGGTGTTCTTTCTCTACGAGCCAGTGTGGCATGTATGGCAAAAACTGTATCCGGGGGACGCCGTT
TCCCTGCAGGGGGCAGCGCGGGACATGCTGAGCGCTCTTTACCGCTGCGACCTCTCTGTCTTCCAGTTGT
ATAGCCCCGCGGGCAGCGGGGGGCGCAACCTCACCACGCTGGGCATCTTCGGCGCAGCCACCAACAAGGT
GGTGTGCTCGTCACCACTCTGCCCCGCCTACCGCAAGGAGGTCGTGGGGTTGGTGGACGACCGCGTGTGC
AAGAAGTGCCCGCCACAGCGCCTGGCGCGTTTCGAGGAGGAGTGCCGCAAGTACCGCACACTAGTCATAA
AGGGTGTGCGCGTCTTCGACGTGGCGGTCTTGGCGCCACTGCTGCGAGACCCGGCCCTGGACCTCAAGGT
CATCCACTTGGTGCGTGATCCCCGCGCGGTGGCGAGTTCACGGATCCGCTCGCGCCACGGCCTCATCCGT
GAGAGCCTACAGGTGGTGCGCAGCCGAGACCCGCGAGCTCACCGCATGCCCTTCTTGGAGGCCGCGGGCC
ACAAGCTTGGCGCCAAGAAGGAGGGCGTGGGCGGCCCCGCAGACTACCACGCTCTGGGCGCTATGGAGGT
CATCTGCAATAGTATGGCTAAGACGCTGCAGACAGCCCTGCAGCCCCCTGACTGGCTGCAGGGCCACTAC
CTGGTGGTGCGGTACGAGGACCTGGTGGGAGACCCCGTCAAGACACTACGGAGAGTGTACGATTTTGTGG
GACTGTTGGTGAGCCCCGAAATGGAGCAGTTTGCCCTGAACATGACCAGTGGCTCGGGCTCCTCCTCCAA
GCCTTTCGTGGTATCTGCACGCAATGCCACGCAGGCCGCCAATGCCTGGCGGACCGCCCTCACCTTCCAG
CAGATCAAACAGGTGGAGGAGTTTTGCTACCAGCCCATGGCCGTCCTGGGCTATGAGCGGGTCAACAGCC
CTGAGGAGGTCAAAGACCTCAGCAAGACCCTGCTTCGGAAGCCCCGTCTCTAA

Translation (530 aa):
MSRSPQRALPPGALPRLLQAAPAAAPRALLPQWPRRPGRRWPASPLGMKVFRRKALVLCAGYALLLVLTM
LNLLDYKWHKEPLQQCNPDGPLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAA
AGMAGVAAPPGNGTRGTGGVGDKRQLVYVFTTWRSGSSFFGELFNQNPEVFFLYEPVWHVWQKLYPGDAV
SLQGAARDMLSALYRCDLSVFQLYSPAGSGGRNLTTLGIFGAATNKVVCSSPLCPAYRKEVVGLVDDRVC
KKCPPQRLARFEEECRKYRTLVIKGVRVFDVAVLAPLLRDPALDLKVIHLVRDPRAVASSRIRSRHGLIR
ESLQVVRSRDPRAHRMPFLEAAGHKLGAKKEGVGGPADYHALGAMEVICNSMAKTLQTALQPPDWLQGHY
LVVRYEDLVGDPVKTLRRVYDFVGLLVSPEMEQFALNMTSGSGSSSKPFVVSARNATQAANAWRTALTFQ
QIKQVEEFCYQPMAVLGYERVNSPEEVKDLSKTLLRKPRL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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