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Report for CCDS31213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31213.1 Public Homo sapiens 10 TYSND1 24 110 108 CCDS HistoryNCBI Gene:219743Re-query CCDS DB by CCDS ID:31213.1Re-query CCDS DB by GeneID:219743See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31213.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287078.7 ENSP00000287078.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287078.7Link to Ensembl Protein Viewer:ENSP00000287078.6Re-query CCDS DB by Nucleotide ID:ENST00000287078Re-query CCDS DB by Protein ID:ENSP00000287078
Original member Current member NCBI NM_173555.4 NP_775826.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173555.4Link to Protein Sequence:NP_775826.2Re-query CCDS DB by Nucleotide ID:NM_173555Re-query CCDS DB by Protein ID:NP_775826Link to BLAST:NP_775826.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775826.2 566 Q2T9J0-1 566 100% 0 0

Chromosomal Locations for CCDS 31213.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70139924 70140141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70142668 70142853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70143842 70143972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70145421 70146586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGAGAAGGCAGTGGGGGTCTGCCATGAGGGCGGCCGAGCAGGCGGGCTGCATGGTGAGCGCCTCCCGGG
CCGGACAGCCCGAGGCGGGCCCGTGGAGCTGCAGCGGGGTAATCCTGAGCCGTAGCCCGGGCCTGGTGCT
TTGCCACGGGGGCATCTTCGTCCCCTTCCTGCGAGCTGGCAGCGAAGTCCTGACCGCGGCCGGCGCCGTC
TTCCTGCCTGGCGACAGTTGCAGGGACGACCTGCGCCTGCACGTGCAGTGGGCCCCAACGGCCGCGGGTC
CCGGGGGCGGCGCGGAGCGGGGCCGCCCAGGGCTGTGCACGCCCCAGTGCGCGAGCCTCGAGCCCGGCCC
ACCTGCCCCGTCCCGCGGGCGTCCCCTGCAGCCCCGGCTTCCTGCTGAGCTGCTGCTGCTGCTGAGCTGC
CCGGCCTTCTGGGCCCACTTCGCGCGCCTCTTCGGGGACGAGGCAGCGGAACAGTGGCGCTTCTCGAGCG
CGGCGCGGGATGACGAAGTGTCGGAGGACGAGGAGGCGGATCAACTGAGAGCGCTGGGCTGGTTTGCGCT
GCTGGGCGTGCGGCTAGGCCAGGAGGAGGTGGAGGAGGAGCGCGGGCCAGCCATGGCGGTGTCGCCTCTC
GGGGCCGTGCCCAAGGGTGCGCCATTGCTGGTCTGCGGCTCCCCTTTCGGCGCCTTCTGCCCCGACATCT
TTCTCAACACGCTGAGCTGCGGGGTGCTCAGCAACGTGGCCGGCCCACTGCTGCTTACCGACGCACGCTG
CCTGCCCGGCACCGAGGGCGGCGGCGTGTTCACCGCGCGGCCCGCGGGGGCGCTGGTGGCGCTGGTGGTG
GCGCCGCTCTGTTGGAAGGCCGGCGAATGGGTGGGCTTCACGCTGCTCTGCGCCGCCGCCCCCCTTTTCC
GCGCCGCCCGCGACGCGCTTCACCGCCTGCCGCACAGCACCGCTGCCCTGGCCGCCCTTCTGCCGCCAGA
GGTGGGCGTCCCGTGGGGTCTGCCCCTCCGAGACTCCGGGCCCCTGTGGGCAGCCGCGGCAGTGTTGGTG
GAGTGCGGCACCGTATGGGGCTCCGGAGTGGCTGTGGCACCCCGCCTTGTAGTGACCTGTCGGCACGTGT
CCCCTCGGGAAGCAGCCAGGGTCCTGGTGCGCTCCACCACCCCCAAGAGTGTGGCCATCTGGGGCCGTGT
GGTATTTGCCACTCAGGAGACATGTCCCTATGACATAGCAGTGGTGAGCCTGGAGGAGGACCTGGATGAT
GTCCCCATCCCTGTGCCCGCTGAGCACTTCCATGAAGGCGAGGCTGTGAGTGTGGTGGGCTTTGGCGTCT
TTGGCCAGTCTTGCGGGCCCTCGGTGACCTCAGGCATCCTTTCGGCTGTGGTGCAGGTGAATGGCACGCC
CGTAATGCTGCAGACCACGTGTGCTGTGCACAGCGGCTCCAGTGGGGGACCCCTCTTCTCCAACCACTCA
GGAAACCTCCTTGGCATAATCACCAGCAACACCCGGGACAATAATACGGGGGCCACCTACCCCCACCTGA
ACTTCAGCATTCCCATCACGGTGCTCCAGCCGGCCCTGCAGCAGTACAGCCAGACCCAAGACCTAGGTGG
CCTCCGTGAGCTGGACCGCGCTGCTGAGCCAGTCAGGGTGGTGTGGCGGTTGCAGCGGCCCCTGGCAGAG
GCCCCGCGGAGCAAGCTCTGA

Translation (566 aa):
MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAGSEVLTAAGAV
FLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAPSRGRPLQPRLPAELLLLLSC
PAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLRALGWFALLGVRLGQEEVEEERGPAMAVSPL
GAVPKGAPLLVCGSPFGAFCPDIFLNTLSCGVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVV
APLCWKAGEWVGFTLLCAAAPLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLV
ECGTVWGSGVAVAPRLVVTCRHVSPREAARVLVRSTTPKSVAIWGRVVFATQETCPYDIAVVSLEEDLDD
VPIPVPAEHFHEGEAVSVVGFGVFGQSCGPSVTSGILSAVVQVNGTPVMLQTTCAVHSGSSGGPLFSNHS
GNLLGIITSNTRDNNTGATYPHLNFSIPITVLQPALQQYSQTQDLGGLRELDRAAEPVRVVWRLQRPLAE
APRSKL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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