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Report for CCDS82410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82410.1 Public Homo sapiens 19 ZNF418 24 110 108 CCDS HistoryNCBI Gene:147686Re-query CCDS DB by CCDS ID:82410.1Re-query CCDS DB by GeneID:147686See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 82410.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000425570.7 ENSP00000407039.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425570.7Link to Ensembl Protein Viewer:ENSP00000407039.2Re-query CCDS DB by Nucleotide ID:ENST00000425570Re-query CCDS DB by Protein ID:ENSP00000407039
Original member Current member NCBI NM_001317027.2 NP_001303956.1 Accepted alive Link to Nucleotide Sequence:NM_001317027.2Link to Protein Sequence:NP_001303956.1Re-query CCDS DB by Nucleotide ID:NM_001317027Re-query CCDS DB by Protein ID:NP_001303956Link to BLAST:NP_001303956.1

Chromosomal Locations for CCDS 82410.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57926150 57928047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57930428 57930557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57932430 57932495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGCAAGAAGGCCTTCATAGAATGACTTGGGACTGCATTGCTATTGGGAGCCATGAGAATTCTGTGCAGG
GCACTGTGGCATTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGAGTCTCCTTAGTGAGGTTCA
GAGATGCCTTTACCATGACGTGATGCTGGAGAACTGGGTACTTATATCCTCCCTGGGTTGTTGGTGTGGA
TCAGAAGATGAGGAGGCACCTTCTAAGAAGAGCATTTCTATACAAAGAGTGTCTCAGGTCAGCACTCCTG
GGGCAGGTGTGTCTCCCAAGAAGGCCCACTCTTGTGAAATGTGTGGCGCGATCTTGGGAGACATTTTGCA
CTTGGCAGATCATCAGGGGACACATCACAAGCAGAAACTGCACAGGTGTGAGGCATGGGGGAATAAATTG
TATGATAGTTCAAACCGTCCGCACCAGAATCAGTACCTTGGAGAGAAACCCTATAGAAGCAGTGTTGAGG
AAGCATTGTTTGTGAAGAGGTGTAAGTTCCATGTGTCAGAGGAGTCATCTATCTTCATTCAGAGTGGAAA
GGACTTTTTGCCCAGCTCAGGATTACTGCTGCAGGAGGCCACTCACACTGGGGAGAAGTCAAACAGCAAA
CCTGAGTGTGAGTCTCCCTTTCAGTGGGGAGATACTCATTACAGCTGTGGAGAATGCATGAAACATTCTA
GCACCAAACACGTATTTGTTCAACAGCAGAGACTTCCCTCTAGAGAGGAATGTTATTGCTGGGAATGTGG
GAAATCCTTTAGCAAATATGATAGCGTCAGTAATCATCAGAGAGTTCACACTGGGAAAAGACCTTATGAA
TGTGGAGAATGTGGGAAATCTTTTAGTCATAAGGGCAGCCTTGTTCAGCATCAGCGAGTTCACACTGGGA
AAAGACCTTATGAATGTGGAGAATGTGGGAAATCTTTTAGTCATAAGGGCAGCCTTGTTCAGCATCAGCG
AGTTCATACTGGAGAAAGACCTTATGAGTGTGGAGAATGTGGGAAATCTTTTAGTCAAAATGGTACTCTC
ATTAAACATCAACGAGTTCACACTGGAGAAAGACCTTATGAGTGTGAAGAATGTGGGAAATGTTTTACTC
AGAAGGGCAATCTCATTCAACATCAACGAGGTCACACTAGTGAAAGACCTTATGAGTGTGAAGAATGTGG
AAAATGTTTTAGTCAAAAGGGCACCCTAACTGAACATCATCGAGTTCACACTAGAGAACGACCTTATGAG
TGTGGAGAATGTGGGAAATCTTTTAGTCGAAAGGGACACCTTAGGAACCATCAGCGAGGTCACACTGGAG
AAAGACCTTACGAGTGTGGAGAATGTGGGAAATCTTTTAGTCGAAAGGGCAACCTCATTCAGCATCAGCG
AAGCCACACTGGAGAAAGGCCTTATGAGTGTAGAGAGTGTAGGAAATTATTTAGGGGCAAGTCCCACCTC
ATTGAACACCAGAGAGTTCACACTGGAGAAAGGCCATATGAATGTAATGAATGTGGGAAATCATTTCAAG
ACAGCTCTGGGTTTCGTGTTCATCAGAGAGTTCACACTGGAGAAAAACCGTTTGAGTGTAGTGAATGTGG
GAAGTCATTTCCTCAAAGCTGTTCCCTCCTTCGACATCGGAGAGTTCATACTGGAGAAAGGCCTTATGAA
TGTGGAGAATGTGGAAAGTCATTTCATCAGAGCTCTTCCCTCCTTCGACATCAGAAAACTCACACTGCAG
AAAGACCTTATGAGTGCAGAGAATGTGGGAAATTCTTCTCCAGTCTCCTTGAACACAGGAGAGTTCACAC
TGGAGAAAGGCCTTATGAATGCAGGGAATGTGGAAAAACATTTACTCGAAGGTCTGCGCATTTTAAACAT
CAGAGACTTCATACTCGAGGAAAGCCTTACGAGTGCAGCGAATGTGGGAAATCCTTTGCTGAAACCTTCA
GTCTTACTGAACACAGGAGAGTACACACTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGAAAATCATT
TCATCGAAGCTCTTCTCTCCTTCGACATCAGAGAGTTCACACAGAAAGAAGTCCTTACAAGTGA

Translation (697 aa):
MQEGLHRMTWDCIAIGSHENSVQGTVAFEDVAVNFSQEEWSLLSEVQRCLYHDVMLENWVLISSLGCWCG
SEDEEAPSKKSISIQRVSQVSTPGAGVSPKKAHSCEMCGAILGDILHLADHQGTHHKQKLHRCEAWGNKL
YDSSNRPHQNQYLGEKPYRSSVEEALFVKRCKFHVSEESSIFIQSGKDFLPSSGLLLQEATHTGEKSNSK
PECESPFQWGDTHYSCGECMKHSSTKHVFVQQQRLPSREECYCWECGKSFSKYDSVSNHQRVHTGKRPYE
CGECGKSFSHKGSLVQHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGERPYECGECGKSFSQNGTL
IKHQRVHTGERPYECEECGKCFTQKGNLIQHQRGHTSERPYECEECGKCFSQKGTLTEHHRVHTRERPYE
CGECGKSFSRKGHLRNHQRGHTGERPYECGECGKSFSRKGNLIQHQRSHTGERPYECRECRKLFRGKSHL
IEHQRVHTGERPYECNECGKSFQDSSGFRVHQRVHTGEKPFECSECGKSFPQSCSLLRHRRVHTGERPYE
CGECGKSFHQSSSLLRHQKTHTAERPYECRECGKFFSSLLEHRRVHTGERPYECRECGKTFTRRSAHFKH
QRLHTRGKPYECSECGKSFAETFSLTEHRRVHTGERPYECSECGKSFHRSSSLLRHQRVHTERSPYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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