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Report for CCDS4227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4227.1 Public Homo sapiens 5 APBB3 24 110 108 CCDS HistoryNCBI Gene:10307Re-query CCDS DB by CCDS ID:4227.1Re-query CCDS DB by GeneID:10307See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354402.9 ENSP00000346378.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354402.9Link to Ensembl Protein Viewer:ENSP00000346378.5Re-query CCDS DB by Nucleotide ID:ENST00000354402Re-query CCDS DB by Protein ID:ENSP00000346378
Original member Current member NCBI NM_006051.4 NP_006042.3 Accepted alive Link to Nucleotide Sequence:NM_006051.4Link to Protein Sequence:NP_006042.3Re-query CCDS DB by Nucleotide ID:NM_006051Re-query CCDS DB by Protein ID:NP_006042Link to BLAST:NP_006042.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006042.3 493 O95704-4 493 100% 0 0

Chromosomal Locations for CCDS 4227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140558585 140558821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140560313 140560504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140560639 140560754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140561018 140561101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140561365 140561449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140561587 140561722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140561844 140561849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140562100 140562227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140562353 140562499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140562663 140562723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140563594 140563670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140563752 140563915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140564197 140564245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGCTGGGCAAGGATTACATGCTGGCCATCATTCTGGTCAACTGCGATGATGACTTGTGGGGGGACCACA
GTCTGGAGGTGGAGGCTGGCCTGCCTCCTGGCTGGAGGAAGATCCACGATGCTGCAGGTACTTACTACTG
GCATGTACCCAGCGGTAGCACCCAGTGGCAGCGCCCAACCTGGGAACTAGGAGATGCAGAGGACCCAGGC
ACGGGAACGGAGGGGATCTGGGGACTGCGGCCCCCCAAAGGGAGATCCTTCTCCAGCCTGGAGAGTTCAC
TGGACCGGAGTAACTCTCTGTCCTGGTATGGTGGGGAATCCTACATCCAGAGCATGGAGCCAGGGGCTAA
GTGCTTTGCAGTCCGCTCTCTGGGCTGGGTAGAGGTACCTGAAGAGGACCTGGCACCGGGGAAGAGCAGT
ATTGCAGTCAATAACTGTATCCAGCAGCTGGCCCAGACCCGCAGCCGGAGCCAGCCTCCAGATGGTGCCT
GGGGTGAGGGCCAGAACATGCTGATGATCCTGAAGAAGGATGCCATGAGCCTAGTGAATCCCCTGGACCA
CAGTCTGATCCACTGCCAGCCTCTGGTGCACATCCGTGTGTGGGGCGTGGGGAGCTCCAAGGGCCGTGAC
AGCCCCATCTCTGCCCCTGCTAGGGACTTCGCTTTTGTGGCAAGTGACAAAGATAGCTGTATGCTCAAGT
GCCATGTGTTTTGCTGTGATGTCCCTGCCAAGGCCATTGCCAGTGCCCTACATGGGCTTTGTGCCCAGAT
CTTGTCAGAGCGAGTAGAGGTCAGTGGTGATGCCTCTTGCTGCTCCCCAGACCCCATCTCTCCTGAAGAC
CTGCCACGGCAAGTGGAGCTGCTGGATGCGGTAAGCCAAGCTGCTCAGAAGTACGAGGCACTGTATATGG
GGACACTGCCAGTCACCAAGGCCATGGGCATGGATGTGCTGAACGAGGCCATTGGTACCCTCACCGCCAG
GGGGGACCGGAATGCCTGGGTCCCCACCATGCTCAGTGTGTCTGACTCTCTCATGACTGCACACCCCATT
CAGGCAGAGGCCAGTACAGAGGAGGAGCCATTGTGGCAGTGCCCTGTGCGCCTTGTGACATTTATTGGTG
TTGGCCGCGACCCACACACCTTTGGCCTCATCGCTGACCTGGGCCGTCAGAGCTTCCAGTGCGCAGCCTT
CTGGTGCCAGCCCCATGCAGGGGGACTCTCTGAAGCTGTGCAGGCTGCCTGTATGGTTCAGTACCAGAAG
TGTCTTGTGGCCTCTGCAGCTCGAGGCAAGGCCTGGGGTGCCCAGGCCCGTGCCCGCCTGCGGCTCAAGC
GGACCAGCTCCATGGATTCCCCAGGAGGTCCCCTGCCCCTCCCCCTGCTCAAAGGAGGGGTTGGCGGTGC
AGGGGCAACCCCTCGAAAGCGGGGTGTCTTCTCTTTTCTTGATGCCTTCCGGCTGAAACCCTCTCTGCTC
CATATGCCCTAA

Translation (493 aa):
MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPG
TGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSS
IAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRD
SPISAPARDFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISPED
LPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPI
QAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQK
CLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPSLL
HMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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