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Report for CCDS43370.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
43370.1 |
Public |
Homo sapiens |
5 |
CXXC5 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:51523](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:43370.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:51523](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 43370.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000302517.8 |
ENSP00000302543.3 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000302517.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000302543.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000302517](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000302543](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000511048.1 |
ENSP00000427379.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000511048.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000427379.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000511048](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000427379](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317199.2 |
NP_001304128.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317199.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304128.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317199](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304128](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304128.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317200.2 |
NP_001304129.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317200.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304129.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317200](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304129](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304129.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317201.2 |
NP_001304130.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317201.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304130.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317201](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304130](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304130.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317202.2 |
NP_001304131.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317202.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304131.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317202](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304131](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304131.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317203.2 |
NP_001304132.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317203.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304132.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317203](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304132](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304132.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317204.2 |
NP_001304133.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317204.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304133.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317204](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304133](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304133.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317205.2 |
NP_001304134.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317205.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304134.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317205](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304134](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304134.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317206.2 |
NP_001304135.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317206.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304135.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317206](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304135](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304135.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317207.2 |
NP_001304136.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317207.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304136.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317207](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304136](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304136.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317208.2 |
NP_001304137.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317208.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304137.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317208](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304137](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304137.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317209.2 |
NP_001304138.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317209.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304138.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317209](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304138](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304138.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317210.2 |
NP_001304139.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317210.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304139.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317210](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304139](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304139.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317211.2 |
NP_001304140.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317211.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304140.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317211](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304140](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304140.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_016463.9 |
NP_057547.5 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_016463.9](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_057547.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_016463](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_057547](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_057547.5](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 43370.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (969 nt): ATGTCGAGCCTCGGCGGTGGCTCCCAGGATGCCGGCGGCAGTAGCAGCAGCAGCACCAATGGCAGCGGTG GCAGTGGCAGCAGTGGCCCAAAGGCAGGAGCAGCAGACAAGAGTGCAGTGGTGGCTGCCGCCGCACCAGC CTCAGTGGCAGATGACACACCACCCCCCGAGCGTCGGAACAAGAGCGGTATCATCAGTGAGCCCCTCAAC AAGAGCCTGCGCCGCTCCCGCCCGCTCTCCCACTACTCTTCTTTTGGCAGCAGTGGTGGTAGTGGCGGTG GCAGCATGATGGGCGGAGAGTCTGCTGACAAGGCCACTGCGGCTGCAGCCGCTGCCTCCCTGTTGGCCAA TGGGCATGACCTGGCGGCGGCCATGGCGGTGGACAAAAGCAACCCTACCTCAAAGCACAAAAGTGGTGCT GTGGCCAGCCTGCTGAGCAAGGCAGAGCGGGCCACGGAGCTGGCAGCCGAGGGACAGCTGACGCTGCAGC AGTTTGCGCAGTCCACAGAGATGCTGAAGCGCGTGGTGCAGGAGCATCTCCCGCTGATGAGCGAGGCGGG TGCTGGCCTGCCTGACATGGAGGCTGTGGCAGGTGCCGAAGCCCTCAATGGCCAGTCCGACTTCCCCTAC CTGGGCGCTTTCCCCATCAACCCAGGCCTCTTCATTATGACCCCGGCAGGTGTGTTCCTGGCCGAGAGCG CGCTGCACATGGCGGGCCTGGCTGAGTACCCCATGCAGGGAGAGCTGGCCTCTGCCATCAGCTCCGGCAA GAAGAAGCGGAAACGCTGCGGCATGTGCGCGCCCTGCCGGCGGCGCATCAACTGCGAGCAGTGCAGCAGT TGTAGGAATCGAAAGACTGGCCATCAGATTTGCAAATTCAGAAAATGTGAGGAACTCAAAAAGAAGCCTT CCGCTGCTCTGGAGAAGGTGATGCTTCCGACGGGAGCCGCCTTCCGGTGGTTTCAGTGA
Translation (322 aa): MSSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSGIISEPLN KSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAAMAVDKSNPTSKHKSGA VASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHLPLMSEAGAGLPDMEAVAGAEALNGQSDFPY LGAFPINPGLFIMTPAGVFLAESALHMAGLAEYPMQGELASAISSGKKKRKRCGMCAPCRRRINCEQCSS CRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWFQ
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