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Report for CCDS5383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5383.1 Public Homo sapiens 7 TRA2A 24 110 108 CCDS HistoryNCBI Gene:29896Re-query CCDS DB by CCDS ID:5383.1Re-query CCDS DB by GeneID:29896See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5383.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297071.9 ENSP00000297071.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297071.9Link to Ensembl Protein Viewer:ENSP00000297071.4Re-query CCDS DB by Nucleotide ID:ENST00000297071Re-query CCDS DB by Protein ID:ENSP00000297071
Original member Current member NCBI NM_013293.5 NP_037425.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013293.5Link to Protein Sequence:NP_037425.1Re-query CCDS DB by Nucleotide ID:NM_013293Re-query CCDS DB by Protein ID:NP_037425Link to BLAST:NP_037425.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037425.1 282 Q13595-1 282 100% 0 0

Chromosomal Locations for CCDS 5383.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 23505559 23505569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23505746 23505813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23506138 23506266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23507420 23507535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23512894 23513082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23516363 23516528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23521707 23521840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23531789 23531824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGAGTGATGTGGAGGAAAACAACTTCGAGGGCAGAGAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAA
CTCCTGCTCGTGTAAAATCGGAGAGCAGGTCAGGATCTCGTAGTCCATCAAGGGTTTCCAAACACTCTGA
ATCCCATTCTCGATCAAGATCAAAATCCAGGTCGAGGTCAAGGAGACATTCTCATAGACGTTACACTCGA
TCCAGATCCCACTCTCACTCTCATAGGAGACGATCTCGAAGTAGATCATATACACCAGAATACCGGCGGC
GAAGGAGCCGAAGCCATTCTCCAATGTCTAACCGGAGAAGACATACTGGCAGCAGGGCAAATCCAGATCC
CAACACTTGCCTTGGAGTGTTTGGCCTCAGTTTGTACACAACAGAGAGGGATCTTCGTGAAGTATTTTCT
CGATATGGACCATTGAGTGGTGTCAATGTGGTTTATGATCAGCGAACTGGGCGATCTCGAGGATTTGCTT
TTGTGTATTTTGAGAGAATAGATGACTCAAAGGAGGCTATGGAAAGGGCAAATGGAATGGAGCTGGATGG
TAGAAGAATTCGGGTGGATTATTCTATAACCAAGAGAGCGCACACACCAACACCAGGCATCTACATGGGC
AGACCAACTCATAGTGGTGGGGGTGGTGGAGGAGGCGGCGGCGGTGGAGGTGGAGGTGGTGGCAGACGTC
GAGATTCTTACTATGATAGAGGATATGATCGTGGGTATGACAGATATGAAGACTATGATTACCGATACAG
AAGACGATCACCTTCTCCTTATTATAGTCGATATAGATCACGATCAAGATCTCGTTCCTACAGCCCAAGA
CGCTATTGA

Translation (282 aa):
MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTR
SRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFS
RYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG
RPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPR
RY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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