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Report for CCDS34477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34477.1 Public Homo sapiens 6 TRAM2 24 110 108 CCDS HistoryNCBI Gene:9697Re-query CCDS DB by CCDS ID:34477.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34477.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000182527.4 ENSP00000182527.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000182527.4Link to Ensembl Protein Viewer:ENSP00000182527.3Re-query CCDS DB by Nucleotide ID:ENST00000182527Re-query CCDS DB by Protein ID:ENSP00000182527
Original member Current member NCBI NM_012288.4 NP_036420.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012288.4Link to Protein Sequence:NP_036420.1Re-query CCDS DB by Nucleotide ID:NM_012288Re-query CCDS DB by Protein ID:NP_036420Link to BLAST:NP_036420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036420.1 370 Q15035 370 100% 0 0

Chromosomal Locations for CCDS 34477.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52503197 52503270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52504591 52504754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52505599 52505742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52506032 52506136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52507553 52507623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52508234 52508318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52509528 52509586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52516006 52516122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52516628 52516737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52535783 52535846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52576796 52576915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGCTTTCCGCAGGAGGACGAAAAGTTACCCGCTCTTCAGCCAGGAGTTCGTCATCCACAACCATGCGG
ACATCGGCTTCTGCCTGGTGCTCTGCGTCCTCATCGGGCTTATGTTCGAGGTCACAGCCAAGACTGCCTT
TCTATTTATTTTACCTCAGTATAACATTAGCGTGCCTACAGCAGACAGTGAGACCGTGCACTACCACTAT
GGCCCTAAGGACCTGGTCACAATCTTGTTCTACATCTTCATCACCATCATCTTGCATGCTGTGGTTCAGG
AGTACATTTTAGATAAAATCAGCAAACGGCTTCATCTCTCCAAAGTCAAACACAGCAAGTTCAATGAATC
TGGACAGCTGGTCGTCTTTCATTTCACCTCGGTGATTTGGTGCTTCTACGTGGTGGTGACGGAAGGATAC
TTAACAAACCCAAGAAGCCTCTGGGAAGACTACCCGCATGTGCACCTCCCCTTCCAGGTGAAGTTTTTCT
ACCTATGCCAGCTGGCCTACTGGCTGCACGCACTTCCTGAGCTATACTTCCAGAAGGTACGGAAGGAGGA
AATTCCCCGCCAGCTCCAGTATATTTGCCTGTACCTGGTGCATATAGCTGGAGCATACCTCTTAAACCTG
AGCCGCCTGGGCCTGATCTTGCTGCTGCTGCAGTACTCAACTGAGTTCCTCTTCCACACGGCTAGACTCT
TCTACTTTGCAGATGAAAACAACGAGAAACTGTTCAGTGCCTGGGCTGCTGTTTTTGGGGTTACCCGCCT
CTTCATCCTCACCCTTGCCGTGCTGGCCATTGGCTTTGGACTGGCTCGCATGGAAAACCAGGCATTTGAT
CCCGAGAAAGGGAACTTCAACACTTTGTTTTGCAGGCTCTGCGTGCTGCTGCTGGTGTGTGCCGCCCAGG
CCTGGCTCATGTGGCGCTTCATCCACTCCCAGCTGCGGCACTGGCGGGAATACTGGAATGAGCAGAGTGC
AAAGCGGAGAGTCCCAGCCACACCCAGACTACCAGCCAGGCTCATCAAGAGGGAATCTGGTTACCATGAA
AATGGAGTGGTGAAGGCAGAGAACGGAACCTCCCCACGGACTAAGAAACTCAAGTCTCCCTAA

Translation (370 aa):
MAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTAFLFILPQYNISVPTADSETVHYHY
GPKDLVTILFYIFITIILHAVVQEYILDKISKRLHLSKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGY
LTNPRSLWEDYPHVHLPFQVKFFYLCQLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNL
SRLGLILLLLQYSTEFLFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFD
PEKGNFNTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKRESGYHE
NGVVKAENGTSPRTKKLKSP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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